Browse Element(s) Details


Os.11907.1.S1_at

Description gb:AK066700.1
DB_XREF= gi:32976718
TID=Os.11907.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073J21, full insert sequence.
FL= gb:AK066700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4160010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41550Os.21626.1.S1_s_at11/1111+24427653..24429994expressed protein
LOC_Os11g41550OsAffx.31431.1.S1_at11/1111+24427653..24429994expressed protein
LOC_Os11g41560Os.53761.1.S1_at11/1111+24431187..24433786F-box domain containing protein, expressed
LOC_Os11g41570OsAffx.31432.1.S1_at11/1111+24435433..24438560F-box domain containing protein
LOC_Os11g41580NANA11+24440112..24441438transposon protein, putative, unclassified
LOC_Os11g41590OsAffx.19311.1.S1_at11/1111+24446932..24448320hypothetical protein
LOC_Os11g41600Os.11907.1.S1_at10/1111+24449427..24451354expressed protein
LOC_Os11g41610Os.12350.1.S1_s_at11/1111+24472318..2447405140S ribosomal protein S29, putative, expressed
LOC_Os11g41620NANA11+24474794..24477526transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11907.1.S1_at--1140--3171Chr11:24449999..24450023 (25 bp)
CAATTCTACAGCTTCCAGAGCAGCA
LOC_Os11g41600
Os.11907.1.S1_at--110--2751Chr11:24449923..24449947 (25 bp)
AAGAAGAATGCGACCTCCAGCTGAC
LOC_Os11g41600
Os.11907.1.S1_at--18--6151Chr11:24449837..24449861 (25 bp)
GAGGTGAGGTCATCCAACTCGGACT
LOC_Os11g41600
Os.11907.1.S1_at--181--431Chr11:24449755..24449779 (25 bp)
ATCATCACCATCAGTTGGACTGCGC
LOC_Os11g41600
Os.11907.1.S1_at--978--9411Chr11:24449662..24449686 (25 bp)
TCGTGGACAACGAGATGAGCCTCCT
LOC_Os11g41600
Os.11907.1.S1_at--265--1651Chr11:24449635..24449659 (25 bp)
AGCCTCCATGGCTCAACCAGTGCTT
LOC_Os11g41600
Os.11907.1.S1_at--469--9711Chr11:24449623..24449647 (25 bp)
TCAACCAGTGCTTGAGCTTGAGGAT
LOC_Os11g41600
Os.11907.1.S1_at--408--8011Chr11:24449602..24449626 (25 bp)
GGATGGCGTGATTAGCTTATAGCTA
LOC_Os11g41600
Os.11907.1.S1_at--28--8011Chr11:24449507..24449531 (25 bp)
GGATGGATGCTGTTACTTACGTTGT
LOC_Os11g41600
Os.11907.1.S1_at--168--7051Chr11:24449484..24449508 (25 bp)
GTAAATCACAGAGCTAATCTTCTTT
LOC_Os11g41600
Os.11907.1.S1_at--760--2471NONE
AACACTTGATTGTCTCGTGTTCTTG
NONE
Target Sequence 
CAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGCAGATCAAGAAGAGGAAGA
AGAATGCGACCTCCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGNGAGGGGGCACAAGGGGAAGA
AGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGGCGGCGTCGTCGACGTCGACGGAGTCCGAGCTGNCCCNAGTTCAA
GAATCATCATCACCATCAGTTGGACTGCGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCA
AGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGG
ATGGCGTGATTAGCTTATAGCTAGAAATTGTAGATTTGTTGCATCGATGAAGAAGAAGAAGAAGAAGAAGANNNGATCGA
TCGATCGAGGAGNGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATT
GGTAAAGAGATGAACACTTGATTGTCTCGTGTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis