Browse Element(s) Details


Os.21626.1.S1_s_at

Description gb:BU666935
DB_XREF= gi:23380490
DB_XREF=3I002d08
CLONE=3I002d08
TID=Os.21626.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21626 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41530OsAffx.4205.2.A1_at10/1111+24405548..24406707expressed protein
LOC_Os11g41540Os.49385.1.S1_at11/1111+24410147..24415690NB-ARC domain containing protein, expressed
LOC_Os11g41550Os.21626.1.S1_s_at11/1111+24427653..24429994expressed protein
LOC_Os11g41550OsAffx.31431.1.S1_at11/1111+24427653..24429994expressed protein
LOC_Os11g41560Os.53761.1.S1_at11/1111+24431187..24433786F-box domain containing protein, expressed
LOC_Os11g41570OsAffx.31432.1.S1_at11/1111+24435433..24438560F-box domain containing protein
LOC_Os11g41580NANA11+24440112..24441438transposon protein, putative, unclassified
LOC_Os11g41590OsAffx.19311.1.S1_at11/1111+24446932..24448320hypothetical protein
LOC_Os11g41600Os.11907.1.S1_at10/1111+24449427..24451354expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21626.1.S1_s_at--788--7591Chr11:24429506..24429530 (25 bp)
GGGACATAATTGTGCACCCTTTGGC
LOC_Os11g41550
Os.21626.1.S1_s_at--807--1811Chr11:24429521..24429545 (25 bp)
ACCCTTTGGCATCCTTGGATTTCAT
LOC_Os11g41550
Os.21626.1.S1_s_at--262--10031Chr11:24429673..24429697 (25 bp)
TAGAAGGCTCATTCGTGTACACTCC
LOC_Os11g41550
Os.21626.1.S1_s_at--756--3511Chr11:24429701..24429725 (25 bp)
CATGATTGGAGACCTTTAATGAAGA
LOC_Os11g41550
Os.21626.1.S1_s_at--1135--8691Chr11:24429818..24429842 (25 bp)
TGTCCGAAAACCTGGGTGTTCTTTG
LOC_Os11g41550
Os.21626.1.S1_s_at--920--3891Chr11:24429829..24429853 (25 bp)
CTGGGTGTTCTTTGGTCTATGTTTA
LOC_Os11g41550
Os.21626.1.S1_s_at--152--3571Chr11:24429882..24429906 (25 bp)
CTTAGTATAATCTGACCGTTGTTTT
LOC_Os11g41550
Os.21626.1.S1_s_at--840--3851Chr11:24429893..24429917 (25 bp)
CTGACCGTTGTTTTGGCAACTGAGT
LOC_Os11g41550
Os.21626.1.S1_s_at--406--5151Chr11:24429908..24429932 (25 bp)
GCAACTGAGTTGCATGTACCACCCT
LOC_Os11g41550
Os.21626.1.S1_s_at--1076--1231Chr11:24429915..24429939 (25 bp)
AGTTGCATGTACCACCCTGTATGAT
LOC_Os11g41550
Os.21626.1.S1_s_at--546--6971Chr11:24429923..24429947 (25 bp)
GTACCACCCTGTATGATTTTATTCA
LOC_Os11g41550
Target Sequence 
GGGACATAATTGTGCACCCTTTGGCATCCTTGGATTTCATCCTTACAAGGAAGTTATTTACTTGNAAGAAGAANTTCANA
AACNNGGTGGCGTNATCATNNTGAATAGCTCGAAGATTCNATATCTGGGCTACTCGCGCCCAAAGTGTTACGGCCANTAC
TCANCAANTGGTATAGAAGGCTCATTCGTGTACACTCCATGCATGATTGGAGACCTTTAATGAAGACNTACANTTTGGAT
AGAGCTTNNATCTTAAATAACANGAACNATATATTTNACNAGGGCTTACAGTTGAACAGATCANAGAAACNATAATGGCG
GGATCANTGTCCGAAAACCTGGGTGTTCTTTGGTCTATGTTTATTATTCATGGAATTCCATATTCTTGAANCTTAGTATA
ATCTGACCGTTGTTTTGGCAACTGAGTTGCATGTACCACCCTGTATGATTTTATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21626.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis