Browse Element(s) Details


OsAffx.31432.1.S1_at

Description tigr:9639.m03823
TID=OsAffx.31432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4157011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41540Os.49385.1.S1_at11/1111+24410147..24415690NB-ARC domain containing protein, expressed
LOC_Os11g41550Os.21626.1.S1_s_at11/1111+24427653..24429994expressed protein
LOC_Os11g41550OsAffx.31431.1.S1_at11/1111+24427653..24429994expressed protein
LOC_Os11g41560Os.53761.1.S1_at11/1111+24431187..24433786F-box domain containing protein, expressed
LOC_Os11g41570OsAffx.31432.1.S1_at11/1111+24435433..24438560F-box domain containing protein
LOC_Os11g41580NANA11+24440112..24441438transposon protein, putative, unclassified
LOC_Os11g41590OsAffx.19311.1.S1_at11/1111+24446932..24448320hypothetical protein
LOC_Os11g41600Os.11907.1.S1_at10/1111+24449427..24451354expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31432.1.S1_at--384--8771Chr11:24435995..24436019 (25 bp)
TGTTTGTCAGACCACATTTAGGCAA
LOC_Os11g41570
OsAffx.31432.1.S1_at--553--6551Chr11:24435936..24435960 (25 bp)
GATTATCAACTCTCAGTCTGGATCC
LOC_Os11g41570
OsAffx.31432.1.S1_at--998--7171Chr11:24435921..24435945 (25 bp)
GTCTGGATCCTCAAAGAATCAGCTG
LOC_Os11g41570
OsAffx.31432.1.S1_at--435--2491Chr11:24435869..24435893 (25 bp)
AACATGACCTTTGGGCAGCGATCAA
LOC_Os11g41570
OsAffx.31432.1.S1_at--585--7731Chr11:24435822..24435846 (25 bp)
GGTGGTCACCAGATTAATGGGCCTT
LOC_Os11g41570
OsAffx.31432.1.S1_at--252--2971Chr11:24435807..24435831 (25 bp)
AATGGGCCTTGGGTCTTAGAAGAGA
LOC_Os11g41570
OsAffx.31432.1.S1_at--297--4951Chr11:24435639..24435663 (25 bp)
GCATACTTTCGTATCCTTGGATTTC
LOC_Os11g41570
OsAffx.31432.1.S1_at--1016--5511Chr11:24435585..24435609 (25 bp)
GAAACATTACGAACATTTGCCTATC
LOC_Os11g41570
OsAffx.31432.1.S1_at--1139--6551Chr11:24435544..24435568 (25 bp)
GATTCAATACTTGGGCTACTCATGC
LOC_Os11g41570
OsAffx.31432.1.S1_at--752--3511Chr11:24435524..24435548 (25 bp)
CATGCCCTAAATATTGCTACGGAAG
LOC_Os11g41570
OsAffx.31432.1.S1_at--276--6471Chr11:24435500..24435524 (25 bp)
GATACACAATACATGAGTCGTTCGT
LOC_Os11g41570
Target Sequence 
TGTTTGTCAGACCACATTTAGGCAAATCTAAGATGGGTGTGTCATTTGGATTTATTGATGATTATCAACTCTCAGTCTGG
ATCCTCAAAGAATCAGCTGGACAAATTAAGTGGGTCTTAAGTTACCAACATGACCTTTGGGCAGCGATCAATCAAATAGA
TTCGTTTGATTTTGGTGGTCACCAGATTAATGGGCCTTGGGTCTTAGAAGAGACCATCCCAAAATACAGAACAATTGAAA
ACAAGGAGACTCTCTCAGACAAAGAGTGGGATTCCGACAATGATGATTTTCTTGATACTGAAGTTGATGATTTTCTAATT
GATACTGAAGTTGATGATGAGGGACATAACGATTTTGCATACTTTCGTATCCTTGGATTTCATCCTTACAAGGAAGTCAT
TTTCTTAGAAGAAACATTACGAACATTTGCCTATCATTTGAATAGCTCAAAGATTCAATACTTGGGCTACTCATGCCCTA
AATATTGCTACGGAAGATACACAATACATGAGTCGTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis