Browse Element(s) Details


OsAffx.7376.1.S1_at

Description tigr:9639.m03831
TID=OsAffx.7376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=adenylylsulfate kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4165011/11Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41610Os.12350.1.S1_s_at11/1111+24472318..2447405140S ribosomal protein S29, putative, expressed
LOC_Os11g41620NANA11+24474794..24477526transposon protein, putative, Mutator sub-class
LOC_Os11g41630OsAffx.19312.1.S1_at11/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41630OsAffx.29766.1.S1_x_at2/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41640OsAffx.31433.1.S1_at11/1111+24481564..24482895Helix-loop-helix DNA-binding domain containing protein
LOC_Os11g41650OsAffx.7376.1.S1_at11/1111+24487670..24491878Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os11g41659NANA11+24498220..24498413NA
LOC_Os11g41670Os.53307.1.S1_at11/1111+24503513..24507861expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7376.1.S1_at--1096--671Chr11:24490764..24490788 (25 bp)
ATGACTGCCCAGTAAACCAGCTTGA
LOC_Os11g41650
OsAffx.7376.1.S1_at--572--8811Chr11:24490819..24490843 (25 bp)
TGTTGTTTGGATCACTGGCCTAAGT
LOC_Os11g41650
OsAffx.7376.1.S1_at--377--1971Chr11:24490973..24490997 (25 bp)
ACTGAGCCGTGAGCTGCACTCAAGA
LOC_Os11g41650
OsAffx.7376.1.S1_at--108--1091Chr11:24490997..24491021 (25 bp)
AGGGCATCTGACCTATGTTCTTGAC
LOC_Os11g41650
OsAffx.7376.1.S1_at--877--4891Chr11:24491059..24491083 (25 bp)
GCTTCAAAGCCAAGGATCGTGCCGA
LOC_Os11g41650
OsAffx.7376.1.S1_at--302--9791Chr11:24491259..24491283 (25 bp)
TAAGAGTGATCGAAGCGCCTGCCGC
LOC_Os11g41650
OsAffx.7376.1.S1_at--954--131Chr11:24491286..24491310 (25 bp)
ATTACTACCCAATTCTTCGTTCATT
LOC_Os11g41650
OsAffx.7376.1.S1_at--1130--9551Chr11:24491299..24491429 (25 bp)
TCTTCGTTCATTGAGGTGTTCCTGA
LOC_Os11g41650
OsAffx.7376.1.S1_at--979--6691Chr11:24491422..24491446 (25 bp)
GTTCCTGAATGTCCCACTTGAAGTA
LOC_Os11g41650
OsAffx.7376.1.S1_at--257--2311Chr11:24491465..24491489 (25 bp)
AAAGGCCTGTACAAGCTTGCTCGTG
LOC_Os11g41650
OsAffx.7376.1.S1_at--909--5711Chr11:24491804..24491828 (25 bp)
GACTGCCCTTCACCTAAATCAATGG
LOC_Os11g41650
Target Sequence 
ATGACTGCCCAGTAAACCAGCTTGACAGACAAAAGTTGCTGAACCAGAAGGGCTGTGTTGTTTGGATCACTGGCCTAAGT
GGTTCAGGAAAAAGCACCCTTGCATGTGCACTGAGCCGTGAGCTGCACTCAAGAGGGCATCTGACCTATGTTCTTGACGG
CGACAATCTCCGGCACGGCCTGAACAAAGATCTCAGCTTCAAAGCCAAGGATCGTGCCGAAAATATACGCAGAGTTGGAG
AAGTGGCAAAGCTGTTTGCAGATGCTGGATTGATCTGCATTACTAGTTTGATATCACCCTATAAGAGTGATCGAAGCGCC
TGCCGCAAATTACTACCCAATTCTTCGTTCATTGAGGTGTTCCTGAATGTCCCACTTGAAGTATGTGAAGAAAGGGATCC
AAAAGGCCTGTACAAGCTTGCTCGTGCCGGCAAAATCAAAGGCTTTACGGGAATAGATGATCCTTATGAAACACCTTCAG
ATTGTGAGATTGTGATACAGTGCAAAGTTGGGGACTGCCCTTCACCTAAATCAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis