Browse Element(s) Details


Os.53307.1.S1_at

Description gb:AK071927.1
DB_XREF= gi:32981950
TID=Os.53307.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069M04, full insert sequence.
FL= gb:AK071927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4167011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41630OsAffx.19312.1.S1_at11/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41630OsAffx.29766.1.S1_x_at2/1111+24478427..24478948GRF zinc finger family protein
LOC_Os11g41640OsAffx.31433.1.S1_at11/1111+24481564..24482895Helix-loop-helix DNA-binding domain containing protein
LOC_Os11g41650OsAffx.7376.1.S1_at11/1111+24487670..24491878Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os11g41659NANA11+24498220..24498413NA
LOC_Os11g41670Os.53307.1.S1_at11/1111+24503513..24507861expressed protein
LOC_Os11g41680Os.20261.1.S1_at3/1111+24520346..24522098Cytochrome P450 family protein
LOC_Os11g41690NANA11+24528496..24531981retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53307.1.S1_at--949--10491Chr11:24504070..24504094 (25 bp)
TTAATAAAAGATGTGTACTCCCTCC
LOC_Os11g41670
Os.53307.1.S1_at--864--8151Chr11:24503929..24503953 (25 bp)
GGAAATGTACAAACTAAATCTCTTT
LOC_Os11g41670
Os.53307.1.S1_at--889--7471Chr11:24503844..24503868 (25 bp)
GTGTGGCCATATAAAACAGGGACTT
LOC_Os11g41670
Os.53307.1.S1_at--896--7032Chr11:24503808..24503832 (25 bp)
GTACAATTTGCTACTAATGTTTATT
LOC_Os11g41670
Os.53307.1.S1_at--579--9491Chr11:24503775..24503799 (25 bp)
TCTACAAACGTGTGTGACTCCGAAC
LOC_Os11g41670
Os.53307.1.S1_at--932--5711Chr11:24503760..24503784 (25 bp)
GACTCCGAACTGTCACATGTATTTG
LOC_Os11g41670
Os.53307.1.S1_at--349--1011Chr11:24503676..24503700 (25 bp)
AGGTATTAACAGCTCCAATCCACAT
LOC_Os11g41670
Os.53307.1.S1_at--203--4791Chr11:24503665..24503689 (25 bp)
GCTCCAATCCACATCATCTATTTAT
LOC_Os11g41670
Os.53307.1.S1_at--139--9051Chr11:24503616..24503640 (25 bp)
TGCAGAGTTAGGTAGTGTCGTTATC
LOC_Os11g41670
Os.53307.1.S1_at--588--7831Chr11:24503606..24503630 (25 bp)
GGTAGTGTCGTTATCTTAAGGTATA
LOC_Os11g41670
Os.53307.1.S1_at--57--9555Chr09:6988172..6988191 (20 bp)
TCAGAAAACAGATACTCCCTCCATC
NONE
Target Sequence 
TTAATAAAAGATGTGTACTCCCTCCGTTTTATATTGTAAGACTTTCTAGTATTATCCATTCATATAGATGTTTATGAATC
TATATGAATGTGAGCAATGCTAGAAAATCTTACATTGTAAAACGGATGAAGTATTTATGTTGGAAATGTACAAACTAAAT
CTCTTTGAAGTAGATATACAATGTGTAGGGACTTGAATGTTAATTTACAATACTTTAAAATAATGAGTGTGGCCATATAA
AACAGGGACTTAAACGGAAAATGTACAATTTGCTACTAATGTTTATTTGGATTATTCTACAAACGTGTGTGACTCCGAAC
TGTCACATGTATTTGTTTTGTTTTGTTAACTCAAATTTTAAATCGTTCGTAGTAACAATTGAAAATTAGGTGTTAGGTAT
TAACAGCTCCAATCCACATCATCTATTTATAGTAATGTCATTATCTTAAAAAAATGCAGAGTTAGGTAGTGTCGTTATCT
TAAGGTATATGAATATAGAAATATATCATGAGTCACAATTAAATATAATTATCATAGTTGGTATAATTGGATTATCAGAA
AACAGATACTCCCTCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis