Browse Element(s) Details


Os.20261.1.S1_at

Description gb:AK067543.1
DB_XREF= gi:32977561
TID=Os.20261.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112D07, full insert sequence.
FL= gb:AK067543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4171011/11Cytochrome P450 family protein, expressed
LOC_Os11g416803/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41680Os.20261.1.S1_at3/1111+24520346..24522098Cytochrome P450 family protein
LOC_Os11g41690NANA11+24528496..24531981retrotransposon protein, putative, unclassified
LOC_Os11g41700OsAffx.22896.1.S1_x_at2/1111+24534327..24534620transposon protein, putative, unclassified
LOC_Os11g41710Os.20261.1.S1_at11/1111+24539522..24541645Cytochrome P450 family protein, expressed
LOC_Os11g41720Os.39427.1.A1_at11/1111+24549959..24553741hypothetical protein
LOC_Os11g41720Os.39427.1.A1_s_at2/1111+24549959..24553741hypothetical protein
LOC_Os11g41720OsAffx.28025.4.S1_x_at1/1111+24549959..24553741hypothetical protein
LOC_Os11g41730NANA11+24556670..24560844transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g41740NANA11+24562431..24562919retrotransposon protein, putative, unclassified
LOC_Os11g41750OsAffx.21897.5.S1_x_at6/1111+24566319..24569260retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20261.1.S1_at--535--10112Chr11:24541156..24541180 (25 bp)
TATGTCCTGGAATAGCTTTTGGTCT
LOC_Os11g41710
Os.20261.1.S1_at--775--5912Chr11:24541191..24541215 (25 bp)
GAGCTTGTGCTAGCAAGTCTCTTGT
LOC_Os11g41710
Os.20261.1.S1_at--821--5971Chr11:24541242..24541266 (25 bp)
GAGACGGAGCTTGGGAACCTTGATA
LOC_Os11g41710
Os.20261.1.S1_at--966--291Chr11:24541287..24541311 (25 bp)
ATAGCACGACGGCTCCATGATCTTT
LOC_Os11g41710
Os.20261.1.S1_at--959--712Chr11:24541303..24541327 (25 bp)
ATGATCTTTCGCTTGTTCCAGTCAT
LOC_Os11g41710
Os.20261.1.S1_at--576--91Chr11:24541326..24541350 (25 bp)
ATTCGCCATCCATTACCGGTAGATA
LOC_Os11g41710
Os.20261.1.S1_at--781--6531Chr11:24541379..24541403 (25 bp)
GATTTACATCTTGGAGGGCTACTCT
LOC_Os11g41710
Os.20261.1.S1_at--15--8031Chr11:24541391..24541415 (25 bp)
GGAGGGCTACTCTGTTTACACAAGT
LOC_Os11g41710
Os.20261.1.S1_at--296--10751Chr11:24541443..24541467 (25 bp)
TTGCAAACTTGCTGCATTCACTGCC
LOC_Os11g41710
Os.20261.1.S1_at--364--3592Chr11:24541457..24541481 (25 bp)
CATTCACTGCCCAATTACAAGCGTT
LOC_Os11g41710
Os.20261.1.S1_at--1104--2252Chr11:24541607..24541631 (25 bp)
AAATAAAGTCAGCACCTCTCCATGT
LOC_Os11g41710
Target Sequence 
TATGTCCTGGAATAGCTTTTGGTCTAGTGAACTTGGAGCTTGTGCTAGCAAGTCTCTTGTACCATTTCAACTGGGAGCTT
CCTGATGAGACGGAGCTTGGGAACCTTGATATGAAGGAGGAGATGGGGGCAATAGCACGACGGCTCCATGATCTTTCGCT
TGTTCCAGTCATTCGCCATCCATTACCGGTAGATATGTAATAGCTATCAGTCAGTAGCTTGATGATTTACATCTTGGAGG
GCTACTCTGTTTACACAAGTTTGAACCAATGCAGTTAAATAAATAATTTGCAAACTTGCTGCATTCACTGCCCAATTACA
AGCGTTGGTCCAAATATACATGTTTGCATTAGAAAACATGTATTATCGTTGTTAAAACACTTGTACTTTTATATTTGTAA
CATACCACTATAGGTGTACCCAGTAAATTATGTGTATGAAAATGTGGCAATAAATAAAGTCAGCACCTCTCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis