Browse Element(s) Details


OsAffx.3902.1.S1_at

Description tigr:9632.m02479
TID=OsAffx.3902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g222901/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22280OsAffx.24382.1.S1_x_at11/112+13304016..13315739expressed protein
LOC_Os02g22280Os.27910.1.S1_at2/112+13304016..13315739expressed protein
LOC_Os02g22290Os.54651.1.S1_at3/112+13318079..13323006retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22290Os.24109.1.A1_at3/112+13318079..13323006retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22290Os.52750.1.S1_x_at1/112+13318079..13323006retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22290OsAffx.3902.1.S1_at1/112+13318079..13323006retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os02g22300NANA2+13323985..13324752retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22310NANA2+13328857..13329423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22320NANA2+13330812..13331648retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22330OsAffx.24383.1.S1_at11/112+13332384..13333320hypothetical protein
LOC_Os02g22340OsAffx.12157.1.S1_at11/112+13334765..13335037pol, putative
LOC_Os02g22350OsAffx.24384.1.S1_at10/112+13337395..13340367hypothetical protein
LOC_Os02g22350Os.54531.1.S1_at1/112+13337395..13340367hypothetical protein
LOC_Os02g22360NANA2+13342290..13342925retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3902.1.S1_at--176--1651NONE
AGCCTATAAAAGATCCTGCCGTTCC
NONE
OsAffx.3902.1.S1_at--457--2332Chr04:15367794..15367816 (23 bp)
AAAGATCCTGCCGTTCCAGAAGATC
NONE
OsAffx.3902.1.S1_at--86--4516Chr05:9811544..9811564 (21 bp)
GCCGTTGACGCCGAAGACTTTATGG
NONE
OsAffx.3902.1.S1_at--1061--5795Chr05:9811550..9811938 (25 bp)
GACGCCGAAGACTTTATGGGTGATA
NONE
OsAffx.3902.1.S1_at--683--8632Chr04:15368214..15368238 (25 bp)
TGGGTGATAAAATTCTTTGTGCAAC
NONE
OsAffx.3902.1.S1_at--110--5151Chr04:15368234..15368258 (25 bp)
GCAACTAAAACATCTTTTTGGGCTG
NONE
OsAffx.3902.1.S1_at--363--7711Chr04:15368265..15368289 (25 bp)
GGGTGCAAGCTGATTACTTTGGTAG
NONE
OsAffx.3902.1.S1_at--1129--9011Chr04:15368268..15368292 (25 bp)
TGCAAGCTGATTACTTTGGTAGTCG
NONE
OsAffx.3902.1.S1_at--101--4371NONE
CCACAAGTCTAGTGGCGCAGGCGTG
NONE
OsAffx.3902.1.S1_at--721--8531Chr04:15369808..15369832 (25 bp)
TGGACGTGGCCCTAGAACAGCGGGA
NONE
OsAffx.3902.1.S1_at--964--9431Chr04:15369948..15369972 (25 bp)
TCGGCCTGAGGCCAGCCCAGCGAAT
NONE
Target Sequence 
AGCCTATAAAAGATCCTGCCGTTCCAGAAGATCAGCTCTTCATCGCCGTTGACGCCGAAGACTTTATGGGTGATAAAATT
CTTTGTGCAACTAAAACATCTTTTTGGGCTGGGCTCGGGGTGCAAGCTGATTACTTTGGTAGTCGCACCCCGGCTAATAT
AAGAACCGGTCTTTGGGCCTCTGTTGCAAGGCATCTTCGTGCAACCACAAGTCTAGTGGCGCAGGCGTGGGCCGGAGAGG
GGGTAGTGGGGTGCGGGGAGTGGGTGGCGTGCGCGGGGCGAGGCCATTGTGGTGCGGTGGAGGCTGGACGTGGCCCTAGA
ACAGCGGGAGCGGCAGTTGTGGGAGGCGGTGGCGGCCTCCGGAGGTTGGGGGAGGACCCGACAGGTGGGCCCCACCTGTC
AGCAACCCCAGGAGACAGAGGAGGGGCGCGCGGGCTGTTGGGCCTCGGCCTGAGGCCAGCCCAGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3902.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis