Browse Element(s) Details


Os.13476.1.S1_at

Description gb:AK100291.1
DB_XREF= gi:32985500
TID=Os.13476.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075K17, full insert sequence.
FL= gb:AK100291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g223709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22310NANA2+13328857..13329423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22320NANA2+13330812..13331648retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22330OsAffx.24383.1.S1_at11/112+13332384..13333320hypothetical protein
LOC_Os02g22340OsAffx.12157.1.S1_at11/112+13334765..13335037pol, putative
LOC_Os02g22350OsAffx.24384.1.S1_at10/112+13337395..13340367hypothetical protein
LOC_Os02g22350Os.54531.1.S1_at1/112+13337395..13340367hypothetical protein
LOC_Os02g22360NANA2+13342290..13342925retrotransposon protein, putative, unclassified
LOC_Os02g22370Os.13476.1.S1_at9/112+13349861..13360553expressed protein
LOC_Os02g22380Os.11058.1.S1_x_at11/112+13367815..13371156glycosyltransferase, putative, expressed
LOC_Os02g22380OsAffx.12158.1.S1_at11/112+13367815..13371156glycosyltransferase, putative, expressed
LOC_Os02g22390Os.47130.4.A1_x_at1/112+13374961..13379789retrotransposon, putative, centromere-specific
LOC_Os02g22400NANA2+13380423..13381990retrotransposon protein, putative, unclassified
LOC_Os02g22410NANA2+13385427..13389207retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13476.1.S1_at--933--7491Chr02:13359417..13359441 (25 bp)
GTGGTCTGGGACATCAGTCATTTAT
LOC_Os02g22370
Os.13476.1.S1_at--502--5991Chr02:13359488..13359512 (25 bp)
GAGACTTCTTTATTTCAGGATGCAT
LOC_Os02g22370
Os.13476.1.S1_at--808--6331Chr02:13359506..13359527 (22 bp)
GATGCATACGAGGACTTGCTTGCTC
LOC_Os02g22370
Os.13476.1.S1_at--947--4911Chr02:13360144..13360164 (21 bp)
GCTTGCTCCATTATCTGAAACCGAT
LOC_Os02g22370
Os.13476.1.S1_at--185--8171Chr02:13360176..13360200 (25 bp)
GGAACACTAGAGCTCACATGTACAT
LOC_Os02g22370
Os.13476.1.S1_at--1139--10431Chr02:13360259..13360283 (25 bp)
TTATGGTTTGGTTCTGACTGCTGCT
LOC_Os02g22370
Os.13476.1.S1_at--15--1991Chr02:13360275..13360299 (25 bp)
ACTGCTGCTGGGACATTTTTGGTGA
LOC_Os02g22370
Os.13476.1.S1_at--201--3451Chr02:13360325..13360349 (25 bp)
CAGTTGCCACCAGCTTGTGAGGGAT
LOC_Os02g22370
Os.13476.1.S1_at--786--2991Chr02:13360445..13360469 (25 bp)
AATGTTCCAGCCGTTGTGTGCACAG
LOC_Os02g22370
Os.13476.1.S1_at--374--9491Chr02:13360564..13360588 (25 bp)
TCTGCTGTTCTGCACTTGGTGAATT
NONE
Os.13476.1.S1_at--369--3171Chr02:13360585..13360609 (25 bp)
AATTGCACCGGCGATTTGCGGGAAA
NONE
Target Sequence 
GTGGTCTGGGACATCAGTCATTTATAACTGATGATGCTCTTGATCAAGTATTCTCCCCACCACTGTTGTTGGAGACTTCT
TTATTTCAGGATGCATACGAGGACTTGCTTGCTCCATTATCTGAAACCGATACAGCTTTAATGGAACACTAGAGCTCACA
TGTACATTGTGTAATACTTTGACCACNTGCCGTAAGCTTCAGTGCTTGATCNCAGCCTGGAGGTTCTTATGGTTTGGTTC
TGACTGCTGCTGGGACATTTTTGGTGAATTTCTTGCTGGTTGTGTTGCTTGCCAGTTGCCACCAGCTTGTGAGGGATGTC
TGCGTCAGAAGAAGGGGTATTATTAGGGAAAGTTGGGGTATTTGGTTTTGGGGAGAGGAAAAGAGTGTTTTAGTGGTGAT
ATAGATGTCTGTAATGTTCCAGCCGTTGTGTGCACAGTAAGATAAGATTCAAAATCGTGTGTATTTAGCGTACATTNTNN
NNNNNTNNTNTNNTNNNNTNNNNNGNTTTTCTGATGTGCGGGTTCTGCTGTTCTGCACTTGGTGAATTGCACCGGCGATT
TGCGGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis