Browse Element(s) Details


Os.11058.1.S1_x_at

Description gb:AK070014.1
DB_XREF= gi:32980038
TID=Os.11058.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038E13, full insert sequence.
FL= gb:AK070014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2238011/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22360NANA2+13342290..13342925retrotransposon protein, putative, unclassified
LOC_Os02g22370Os.13476.1.S1_at9/112+13349861..13360553expressed protein
LOC_Os02g22380Os.11058.1.S1_x_at11/112+13367815..13371156glycosyltransferase, putative, expressed
LOC_Os02g22380OsAffx.12158.1.S1_at11/112+13367815..13371156glycosyltransferase, putative, expressed
LOC_Os02g22390Os.47130.4.A1_x_at1/112+13374961..13379789retrotransposon, putative, centromere-specific
LOC_Os02g22400NANA2+13380423..13381990retrotransposon protein, putative, unclassified
LOC_Os02g22410NANA2+13385427..13389207retrotransposon protein, putative, unclassified
LOC_Os02g22420Os.28943.1.S1_x_at2/112+13390140..13393360retrotransposon protein, putative, unclassified
LOC_Os02g22430Os.47130.4.A1_x_at1/112+13394314..13394640retrotransposon protein, putative, unclassified
LOC_Os02g22430Os.37083.2.S1_at1/112+13394314..13394640retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11058.1.S1_x_at--790--631Chr02:13369880..13369904 (25 bp)
ATGCAGCTCCGGTACGTGGAGTACT
LOC_Os02g22380
Os.11058.1.S1_x_at--930--5991Chr02:13369919..13369943 (25 bp)
GAGACGAGCCTGAAGCACAACTACT
LOC_Os02g22380
Os.11058.1.S1_x_at--274--2031Chr02:13369938..13369962 (25 bp)
ACTACTCGCGAGATCACATGGTGTT
LOC_Os02g22380
Os.11058.1.S1_x_at--721--9331Chr02:13370004..13370028 (25 bp)
TCGCCGCGACTATCATGAAGCAGGA
LOC_Os02g22380
Os.11058.1.S1_x_at--769--911Chr02:13370081..13370105 (25 bp)
AGGCTGCAGCAGTAACTCGTCTATC
LOC_Os02g22380
Os.11058.1.S1_x_at--734--7151Chr02:13370099..13370123 (25 bp)
GTCTATCCCAATAATCGCAGGCAGC
LOC_Os02g22380
Os.11058.1.S1_x_at--22--8271Chr02:13370118..13370142 (25 bp)
GGCAGCTCATGGCACACATCAATGT
LOC_Os02g22380
Os.11058.1.S1_x_at--639--251Chr02:13370143..13370167 (25 bp)
ATATGCCGGGACGAGACGACACGAC
LOC_Os02g22380
Os.11058.1.S1_x_at--840--2631Chr02:13370240..13370264 (25 bp)
AACCATCAGTTGTTGGCGAGGCGGT
LOC_Os02g22380
Os.11058.1.S1_x_at--621--6211Chr02:13370257..13370281 (25 bp)
GAGGCGGTGGAAGCTTTTCGCATAT
LOC_Os02g22380
Os.11058.1.S1_x_at--442--3371Chr02:13370387..13370411 (25 bp)
CAGCCCATTCAACACTATACATTCT
LOC_Os02g22380
Target Sequence 
ATGCAGCTCCGGTACGTGGAGTACTACGTCGGCGAGGAGGAGACGAGCCTGAAGCACAACTACTCGCGAGATCACATGGT
GTTCAAGGACCCCAAGGCGCTCCACGCNCAGGGATGGCAGACACTCGCCGCGACTATCATGAAGCAGGACGTCGAGGTCA
ACCTCACCAGGTTCCGGCCAATCCTGCTGCAGGCGCTCGACAGGCTGCAGCAGTAACTCGTCTATCCCAATAATCGCAGG
CAGCTCATGGCACACATCAATGTATATGCCGGGACGAGACGACACGACGAGGAACAAGAACGGATACTAGTATATTGTAC
TGCTGCTTGAAAGAGATGATGATGATCTTAACCGGAGGAGAACCATCAGTTGTTGGCGAGGCGGTGGAAGCTTTTCGCAT
ATTGGTAATTGGTTGGGTTGTCCATTTTGGGTTTGTAACAATTTGCATAGGCATTACACACCAAAGATGTTCGATTTTTT
TGTTCTTCTTNCACTTCTTCACTTCGCCAGCCCATTCAACACTATACATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11058.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis