Browse Element(s) Details


OsAffx.12158.1.S1_at

Description tigr:9630.m02154
TID=OsAffx.12158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2238011/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22360NANA2+13342290..13342925retrotransposon protein, putative, unclassified
LOC_Os02g22370Os.13476.1.S1_at9/112+13349861..13360553expressed protein
LOC_Os02g22380Os.11058.1.S1_x_at11/112+13367815..13371156glycosyltransferase, putative, expressed
LOC_Os02g22380OsAffx.12158.1.S1_at11/112+13367815..13371156glycosyltransferase, putative, expressed
LOC_Os02g22390Os.47130.4.A1_x_at1/112+13374961..13379789retrotransposon, putative, centromere-specific
LOC_Os02g22400NANA2+13380423..13381990retrotransposon protein, putative, unclassified
LOC_Os02g22410NANA2+13385427..13389207retrotransposon protein, putative, unclassified
LOC_Os02g22420Os.28943.1.S1_x_at2/112+13390140..13393360retrotransposon protein, putative, unclassified
LOC_Os02g22430Os.47130.4.A1_x_at1/112+13394314..13394640retrotransposon protein, putative, unclassified
LOC_Os02g22430Os.37083.2.S1_at1/112+13394314..13394640retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12158.1.S1_at--495--6731Chr02:13370569..13370593 (25 bp)
GTTAAACGAATCTGCATCCCGAGCG
LOC_Os02g22380
OsAffx.12158.1.S1_at--202--6351Chr02:13370660..13370684 (25 bp)
GATGCTCTGTCCAACACTGGTGAAC
LOC_Os02g22380
OsAffx.12158.1.S1_at--1139--7351Chr02:13370679..13370703 (25 bp)
GTGAACTGCTGTATATGCACCCGCC
LOC_Os02g22380
OsAffx.12158.1.S1_at--600--9111Chr02:13370704..13370728 (25 bp)
TGCTGCCTGCTTTCAGCTTAAGGAA
LOC_Os02g22380
OsAffx.12158.1.S1_at--1006--2111Chr02:13370752..13370776 (25 bp)
ACAGGCTAACTAACCGGGCTCTGCA
LOC_Os02g22380
OsAffx.12158.1.S1_at--928--10831Chr02:13370809..13370833 (25 bp)
TTGGGCAATCGAATACCTTCTCTCT
LOC_Os02g22380
OsAffx.12158.1.S1_at--9--5591Chr02:13370872..13370896 (25 bp)
GAGAAAGACCTTCTCCTTTTATCTT
LOC_Os02g22380
OsAffx.12158.1.S1_at--2--3711Chr02:13370913..13370937 (25 bp)
CTAGAACCTTCTTGCTGTCTTTTGG
LOC_Os02g22380
OsAffx.12158.1.S1_at--136--5611Chr02:13370991..13371015 (25 bp)
GAAATTGGCAAGCTAGCCTCACCTT
LOC_Os02g22380
OsAffx.12158.1.S1_at--1124--1671Chr02:13371005..13371029 (25 bp)
AGCCTCACCTTTTCAGTATCGTATG
LOC_Os02g22380
OsAffx.12158.1.S1_at--394--5611Chr02:13371092..13371116 (25 bp)
GACAATCTTGTAGCCGTTAGTATGA
LOC_Os02g22380
Target Sequence 
GTTAAACGAATCTGCATCCCGAGCGTTGAAGGGGCTTAGCTGGTGCGGACGTGCCAGCATGGAAGTGTTCGTGGAGAAGG
AAAATGGATTCGATGCTCTGTCCAACACTGGTGAACTGCTGTATATGCACCCGCCTGCTGCCTGCTTTCAGCTTAAGGAA
AAGATCACTAATAATTGAAAAGCACAGGCTAACTAACCGGGCTCTGCAAGAAAGCTGTGACAGGTAAGTCGTAACTAGTT
TTGGGCAATCGAATACCTTCTCTCTTTTCTTCTCTTTTCTTGAGAGGCAGACAGGGAGATATAGAGAAAGACCTTCTCCT
TTTATCTTTATTTTTTCTTTTTTCCTAGAACCTTCTTGCTGTCTTTTGGTAGGGAAAGAGACTAGAAAATGGAACGATGA
TGAATGCATGAATTTCCCATAAGAAATTGGCAAGCTAGCCTCACCTTTTCAGTATCGTATGCATCACGCGAAAAGATTAA
TCACAAGAGGGTGACCCGGCAACGAGAAGAGGAGATCAGCCAAGACAATCTTGTAGCCGTTAGTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis