Browse Element(s) Details


Os.5319.1.S1_at

Description gb:AK064893.1
DB_XREF= gi:32974911
TID=Os.5319.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5319 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphoglucomutase (OSJNBa0079H13.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K21, full insert sequence.
FL= gb:AK064893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1114010/11Phosphoglucomutase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11100Os.46874.1.S1_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.46874.1.S1_x_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.8976.1.S1_at4/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.1.S1_x_at2/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.2.S1_x_at1/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11110Os.18580.1.S1_at11/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.27021.1.S1_x_at1/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.53962.1.S1_at1/1110+5910667..5916587expressed protein
LOC_Os10g11120Os.38751.1.A1_at7/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11120Os.49802.1.S2_at1/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11130OsAffx.18213.1.S1_at11/1110+5931182..5932093hypothetical protein
LOC_Os10g11140Os.5319.1.S1_at10/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11140Os.56122.1.S1_at1/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11150NANA10+5944987..5946426hypothetical protein
LOC_Os10g11160Os.40855.2.S1_x_at10/1110+5947867..5948829hypothetical protein
LOC_Os10g11160Os.40855.4.S1_x_at3/1110+5947867..5948829hypothetical protein
LOC_Os10g11160Os.40855.4.S1_at1/1110+5947867..5948829hypothetical protein
LOC_Os10g11160Os.40360.1.S1_x_at1/1110+5947867..5948829hypothetical protein
LOC_Os10g11170OsAffx.18215.1.S1_at10/1110+5952620..5953822hypothetical protein
LOC_Os10g11180Os.32672.1.S1_x_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11180OsAffx.2494.1.S1_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11180OsAffx.12184.1.S1_x_at1/1110+5960127..5963265hypothetical protein
LOC_Os10g11190OsAffx.22699.1.S1_x_at1/1110+5964097..5970694retrotransposon protein, putative, unclassified
LOC_Os10g11190OsAffx.18275.1.S1_x_at1/1110+5964097..5970694retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0019252biological_processstarch biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0009570cellular_componentchloroplast stroma
GO:0004614molecular_functionphosphoglucomutase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5319.1.S1_at--551--2031Chr10:5934132..5934156 (25 bp)
ACTATACCCTTCAGTTTGCCGATGA
LOC_Os10g11140
Os.5319.1.S1_at--166--10711Chr10:5934117..5934141 (25 bp)
TTGCCGATGATTTCAGTTACACTGA
LOC_Os10g11140
Os.5319.1.S1_at--894--4251NONE
CCGGTGGATGGTAGCACTGTATCTA
NONE
Os.5319.1.S1_at--861--2871Chr10:5933952..5933976 (25 bp)
AAGGGCTTCGATTTGTATTCACCGA
LOC_Os10g11140
Os.5319.1.S1_at--968--7951Chr10:5933926..5933950 (25 bp)
GGATCTAGGATTATCTTCCGCCTTT
LOC_Os10g11140
Os.5319.1.S1_at--200--111Chr10:5933666..5933690 (25 bp)
ATTCGAGTCTGATGCCTCAAAGCAT
LOC_Os10g11140
Os.5319.1.S1_at--736--5831Chr10:5933507..5933531 (25 bp)
GACCTAGCTCTATCTGTTTCAAAGT
LOC_Os10g11140
Os.5319.1.S1_at--390--9831Chr10:5933441..5933465 (25 bp)
TAAACATACCGGTGACATTAGCAAT
LOC_Os10g11140
Os.5319.1.S1_at--829--2071Chr10:5933427..5933451 (25 bp)
ACATTAGCAATGTTACCACCTGTGT
LOC_Os10g11140
Os.5319.1.S1_at--805--10371Chr10:5933384..5933408 (25 bp)
TTTTATAGCCCCTTCCAACCGATGA
LOC_Os10g11140
Os.5319.1.S1_at--720--2531Chr10:5933313..5933337 (25 bp)
AACTGTATCTTGGAGGTACCTTTCA
LOC_Os10g11140
Target Sequence 
ACTATACCCTTCAGTTTGCCGATGATTTCAGTTACACTGATCCGGTGGATGGTAGCACTGTATCTAAACAAGGGCTTCGA
TTTGTATTCACCGATGGATCTAGGATTATCTTCCGCCTTTCGGGAACCGGATCTGCTGGAGCAACAATCCGTATATACAT
TGAGCAATTCGAGTCTGATGCCTCAAAGCATGATCTGGATGCACAAATAGCTTTGAAGCCTTTAATAGACCTAGCTCTAT
CTGTTTCAAAGTTGAAGGACTTCACTGGAAGAGATAAGCCTACTGTCATAACATAAACATACCGGTGACATTAGCAATGT
TACCACCTGTGTATTCTTTTATTTCTTTGTTTTTATAGCCCCTTCCAACCGATGAACCAATAATGTAATCTTAGGCCAAG
TTTTGTACTGAGTTGATGGCAAACTGTATCTTGGAGGTACCTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis