Browse Element(s) Details


Os.8976.1.S1_at

Description gb:AK108073.1
DB_XREF= gi:32993282
TID=Os.8976.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D01, full insert sequence.
FL= gb:AK108073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g111004/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11060Os.46712.1.S1_x_at11/1110+5877600..5881295expressed protein
LOC_Os10g11060Os.50623.1.S1_at10/1110+5877600..5881295expressed protein
LOC_Os10g11070OsAffx.20650.1.S1_at11/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.2.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.46012.3.S1_x_at2/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070Os.27088.1.A1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.3521.1.S1_x_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11070OsAffx.20650.2.S1_at1/1110+5886114..5889044retrotransposon protein, putative, unclassified
LOC_Os10g11080OsAffx.30387.1.S1_at11/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_x_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11080Os.54408.1.S1_at1/1110+5892614..5894925hypothetical protein
LOC_Os10g11090Os.2235.3.S1_x_at11/1110+5900922..5902664retrotransposon protein, putative, unclassified
LOC_Os10g11100Os.46874.1.S1_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.46874.1.S1_x_at11/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.8976.1.S1_at4/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.1.S1_x_at2/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11100Os.38444.2.S1_x_at1/1110+5904132..5909191retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g11110Os.18580.1.S1_at11/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.27021.1.S1_x_at1/1110+5910667..5916587expressed protein
LOC_Os10g11110Os.53962.1.S1_at1/1110+5910667..5916587expressed protein
LOC_Os10g11120Os.38751.1.A1_at7/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11120Os.49802.1.S2_at1/1110+5919334..5920860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11130OsAffx.18213.1.S1_at11/1110+5931182..5932093hypothetical protein
LOC_Os10g11140Os.5319.1.S1_at10/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed
LOC_Os10g11140Os.56122.1.S1_at1/1110+5933194..5940682Phosphoglucomutase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8976.1.S1_at--952--86120Chr12:11704201..11704225 (25 bp)
TGGTGTTGGCATGTTGTGCCATGTT
NONE
Os.8976.1.S1_at--404--66317Chr12:11704213..11704237 (25 bp)
GTTGTGCCATGTTGGTATGGACTTT
NONE
Os.8976.1.S1_at--1007--75714Chr12:11704271..11704295 (25 bp)
GGGCTCATTTGCTTATACATTTCAG
NONE
Os.8976.1.S1_at--1139--6472Chr11:12223990..12224010 (21 bp)
GATACTAGATTTACTTGTCCTTGCT
NONE
Os.8976.1.S1_at--427--20718Chr12:11704339..11704363 (25 bp)
ACTTGTCCTTGCTTATTTTACTCAT
NONE
Os.8976.1.S1_at--502--98315Chr12:11704392..11704415 (24 bp)
TAAATGTTGAACCTAGAGACCCACT
NONE
Os.8976.1.S1_at--814--5991Chr04:1664699..1664723 (25 bp)
GAGACCCACTATTGGCTAGAAAGCT
NONE
Os.8976.1.S1_at--935--20511Chr12:11296266..11296290 (25 bp)
ACTTCTCTCTCCCTTATGTATATAT
NONE
Os.8976.1.S1_at--336--1721Chr12:11704462..11704486 (25 bp)
ATTTTGGGTAAGACTTGCGAGTACA
NONE
Os.8976.1.S1_at--740--10451Chr04:1664607..1664631 (25 bp)
TTAACCCGGTGTCTACAATTTCAGG
NONE
Os.8976.1.S1_at--537--7132Chr10:5906595..5906883 (25 bp)
GTCTACAATTTCAGGAGAGGATTCC
LOC_Os10g11100
Target Sequence 
TGGTGTTGGCATGTTGTGCCATGTTGGTATGGACTTTGGTAGTCCATGGTTGATGATGAGAGTGCCGTTTGGGCTCATTT
GCTTATACATTTCAGAATTATAATTATATACTTATTGTCCATAAATTAAAATGATACTAGATTTACTTGTCCTTGCTTAT
TTTACTCATTAATTGCTCAATAAAATTAGCTTTATGTAAATGTTGAACCTAGAGACCCACTATTGGCTAGAAAGCTTGCA
TACTTCTCTCTCCCTTATGTATATATATAATTTTGGGTAAGACTTGCGAGTACAATCTTGTACTTAACCCGGTGTCTACA
ATTTCAGGAGAGGATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis