Browse Element(s) Details


OsAffx.7305.1.S1_at

Description tigr:9639.m03209
TID=OsAffx.7305.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3567011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35610NANA11+20383209..20383569hypothetical protein
LOC_Os11g35620OsAffx.19177.2.S1_s_at11/1111+20383829..20386333expressed protein
LOC_Os11g35620OsAffx.19177.2.S1_at11/1111+20383829..20386333expressed protein
LOC_Os11g35620OsAffx.19177.1.S1_at2/1111+20383829..20386333expressed protein
LOC_Os11g35630Os.53737.1.S1_at1/1111+20386808..20390725retrotransposon protein, putative, unclassified
LOC_Os11g35640OsAffx.31312.1.S1_at11/1111+20392603..20394533Leucine Rich Repeat family protein
LOC_Os11g35650Os.46053.2.S1_x_at10/1111+20396822..20400054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35660Os.49950.1.S1_at4/1111+20400945..20404226Leucine Rich Repeat family protein
LOC_Os11g35670OsAffx.7305.1.S1_at11/1111+20407273..20407533hypothetical protein
LOC_Os11g35680Os.45173.1.S1_x_at3/1111+20411407..20418845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35680Os.17297.1.S1_at1/1111+20411407..20418845retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35690OsAffx.20628.2.S1_x_at4/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.20628.2.S1_at3/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.10496.1.S1_at2/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.1647.1.S1_at2/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35690OsAffx.20628.1.S1_at1/1111+20423616..20426529retrotransposon protein, putative, unclassified
LOC_Os11g35700OsAffx.22722.1.S1_at3/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35700OsAffx.22722.1.S1_x_at2/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g35700OsAffx.1646.1.S1_x_at1/1111+20427995..20435784retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7305.1.S1_at--1005--9571Chr11:20407472..20407496 (25 bp)
TCTTCCTCTCGTGCGTGCAGATGCT
LOC_Os11g35670
OsAffx.7305.1.S1_at--471--9511Chr11:20407466..20407490 (25 bp)
TCTCGTGCGTGCAGATGCTGTGCAA
LOC_Os11g35670
OsAffx.7305.1.S1_at--121--9051Chr11:20407457..20407481 (25 bp)
TGCAGATGCTGTGCAAGCGGCTGTT
LOC_Os11g35670
OsAffx.7305.1.S1_at--202--8691Chr11:20407448..20407472 (25 bp)
TGTGCAAGCGGCTGTTGCGCCATGT
LOC_Os11g35670
OsAffx.7305.1.S1_at--123--5171Chr11:20407445..20407469 (25 bp)
GCAAGCGGCTGTTGCGCCATGTGAT
LOC_Os11g35670
OsAffx.7305.1.S1_at--1094--8331Chr11:20407439..20407463 (25 bp)
GGCTGTTGCGCCATGTGATCAGCAA
LOC_Os11g35670
OsAffx.7305.1.S1_at--140--8811Chr11:20407436..20407460 (25 bp)
TGTTGCGCCATGTGATCAGCAAGGC
LOC_Os11g35670
OsAffx.7305.1.S1_at--787--5451Chr11:20407393..20407417 (25 bp)
GAACGAGCGCCTGCTGTGTCGCTGC
LOC_Os11g35670
OsAffx.7305.1.S1_at--48--1671Chr11:20407388..20407412 (25 bp)
AGCGCCTGCTGTGTCGCTGCATCGA
LOC_Os11g35670
OsAffx.7305.1.S1_at--1038--8251Chr11:20407343..20407367 (25 bp)
GGCAGGACCGCAAAGACGTCACGGC
LOC_Os11g35670
OsAffx.7305.1.S1_at--982--1891Chr11:20407328..20407352 (25 bp)
ACGTCACGGCGAAGATGGGCTGCAA
LOC_Os11g35670
Target Sequence 
TCTTCCTCTCGTGCGTGCAGATGCTGTGCAAGCGGCTGTTGCGCCATGTGATCAGCAAGGCGGACTACAAGATGGACCAG
AACGAGCGCCTGCTGTGTCGCTGCATCGACGCCATCATCGCTGGCCGGCGGCAGGACCGCAAAGACGTCACGGCGAAGAT
GGGCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis