Browse Element(s) Details


Os.18523.1.S1_at

Description gb:AK069543.1
DB_XREF= gi:32979567
TID=Os.18523.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025N02, full insert sequence.
FL= gb:AK069543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0705010/11Ssu72-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07000NANA12+3426729..3427016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g07010Os.5507.1.S1_at11/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07010Os.22696.2.S1_x_at2/1112+3428225..343077060S ribosomal protein L3, putative, expressed
LOC_Os12g07020Os.19306.1.S1_at10/1112+3430913..34362215-formyltetrahydrofolate cyclo-ligase family protein, putative, expressed
LOC_Os12g07030Os.54932.1.S1_at11/1112+3436393..3439087expressed protein
LOC_Os12g07039NANA12+3441236..3441570NA
LOC_Os12g07050Os.18523.1.S1_at10/1112+3449066..3453049Ssu72-like protein, expressed
LOC_Os12g07060Os.35805.1.S1_at11/1112+3454590..3462155DnaJ C terminal region family protein, expressed
LOC_Os12g07070OsAffx.7509.1.S1_at11/1112+3465452..3466346hypothetical protein
LOC_Os12g07080NANA12+3469214..3471197transposon protein, putative, Mutator sub-class
LOC_Os12g07090Os.7307.3.S1_x_at2/1112+3472805..3473531retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18523.1.S1_at--508--8191Chr12:3449571..3449595 (25 bp)
GGAAGCTCACATACAACATGGCATT
LOC_Os12g07050
Os.18523.1.S1_at--261--2051Chr12:3449540..3449564 (25 bp)
ACTTCTGTAGTTCATCGTGCGGATT
LOC_Os12g07050
Os.18523.1.S1_at--419--2552Chr12:3449485..3449509 (25 bp)
AACTCGATCGTGTGGATGGCTGGTA
LOC_Os12g07050
Os.18523.1.S1_at--602--8891Chr12:3449431..3449455 (25 bp)
TGAGGTACCAACTGGATCCAAGTGT
LOC_Os12g07050
Os.18523.1.S1_at--939--8571Chr12:3449407..3449431 (25 bp)
TGGTTCCTGTTCCATGCCAACAAAT
LOC_Os12g07050
Os.18523.1.S1_at--150--10131Chr12:3449349..3449373 (25 bp)
TATGTTCTGCGTTGAGTCGCTCGAT
LOC_Os12g07050
Os.18523.1.S1_at--686--6651Chr12:3449294..3449318 (25 bp)
GTTGATCTTGAAGCTACCCATCATC
LOC_Os12g07050
Os.18523.1.S1_at--32--3531Chr12:3449262..3449286 (25 bp)
CATGCAGCACCGAATGTTACTCATT
LOC_Os12g07050
Os.18523.1.S1_at--758--2011Chr12:3449244..3449268 (25 bp)
ACTCATTTGCTTTAGTGGCTGCCTA
LOC_Os12g07050
Os.18523.1.S1_at--495--5191Chr12:3449177..3449201 (25 bp)
GAATTGGCCTATCAGTACAGTACAG
LOC_Os12g07050
Os.18523.1.S1_at--983--10411Chr12:3449066..3449090 (25 bp)
TTATATTTTTCAACCGTCTTCATCG
NONE
Target Sequence 
GGAAGCTCACATACAACATGGCATTTTACTAACTTCTGTAGTTCATCGTGCGGATTATACAGAGGCAGCAGAATCATTCT
TAAATTAACTCGATCGTGTGGATGGCTGGTAGCTTGGCATGCAGGGAAATGTACAAAAACTGAGGTACCAACTGGATCCA
AGTGTGGTTCCTGTTCCATGCCAACAAATGGGGGAAGATGTGTGAAACTTGATTAAAGAAAATATGTTCTGCGTTGAGTC
GCTCGATTGTTGTTAGAGGATAATTGGATATTCAGATGTTGATCTTGAAGCTACCCATCATCTCAAAACCATGCAGCACC
GAATGTTACTCATTTGCTTTAGTGGCTGCCTAAAATTCATGGTGAGCCTGATGAATGGTACAGTACATGTTAATGAATTG
GCCTATCAGTACAGTACAGTAAGATTCAGAAGGTGAACGAGGCAGACAGTGANCNAAACCATGAATTTCAGTGGTGATGG
CTTTCAANNNTATAGNCTAGAAATGCNATTATATTTTTCAACCGTCTTCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis