Browse Element(s) Details


OsAffx.31623.1.S1_at

Description tigr:9640.m00613
TID=OsAffx.31623.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0688011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06840OsAffx.30847.1.S1_s_at11/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06840Os.53000.1.S1_at10/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06850Os.9290.1.A1_at11/1112+3324751..3327804transcription elongation factor, putative, expressed
LOC_Os12g06860OsAffx.4416.1.S1_at1/1112+3334325..3335123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06870Os.10039.1.S1_at4/1112+3337354..3343209Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06880OsAffx.31623.1.S1_at11/1112+3346355..3346828hypothetical protein
LOC_Os12g06890Os.10039.1.S1_at11/1112+3347757..3351994Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06900OsAffx.31624.1.S1_at11/1112+3356303..3357874Citrate binding protein precursor, putative
LOC_Os12g06910Os.26586.1.A1_at11/1112+3359719..3368216Nrap protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31623.1.S1_at--892--2371Chr12:3346774..3346798 (25 bp)
AAACCGCTGCCAAAGGTGGACGATG
LOC_Os12g06880
OsAffx.31623.1.S1_at--934--9031Chr12:3346724..3346748 (25 bp)
TGCACCAAAAGCTGGCGCAGAGCTC
LOC_Os12g06880
OsAffx.31623.1.S1_at--569--3911Chr12:3346713..3346737 (25 bp)
CTGGCGCAGAGCTCCCAAATGGAGA
LOC_Os12g06880
OsAffx.31623.1.S1_at--831--851Chr12:3346611..3346635 (25 bp)
ATGGCTGGCCAAAGGCACCTGTGGA
LOC_Os12g06880
OsAffx.31623.1.S1_at--21--8112Chr12:3346541..3346565 (25 bp)
GGACGTCGTGCCAAAAGGTGAGCCT
LOC_Os12g06880
OsAffx.31623.1.S1_at--1083--2431Chr12:3346529..3346553 (25 bp)
AAAAGGTGAGCCTCCTGTCTGTGCC
LOC_Os12g06880
OsAffx.31623.1.S1_at--985--8311Chr12:3346488..3346512 (25 bp)
GGCTGCCAAATGGTTTCGGCGCGAA
LOC_Os12g06880
OsAffx.31623.1.S1_at--597--8451Chr12:3346443..3346467 (25 bp)
TGGCCTGGCCAAATCCTGTCTGGGC
LOC_Os12g06880
OsAffx.31623.1.S1_at--912--8331Chr12:3346427..3346451 (25 bp)
TGTCTGGGCCCCAAAAGGGTTGCTT
LOC_Os12g06880
OsAffx.31623.1.S1_at--766--3271Chr12:3346416..3346440 (25 bp)
CAAAAGGGTTGCTTGAGGTCTGGCC
LOC_Os12g06880
OsAffx.31623.1.S1_at--462--8311Chr12:3346386..3346410 (25 bp)
GGCTAGTGGACGACTGCCCAAATGC
LOC_Os12g06880
Target Sequence 
AAACCGCTGCCAAAGGTGGACGATGTGGCGCCAAATGCAGGGGCTGGTGATGCACCAAAAGCTGGCGCAGAGCTCCCAAA
TGGAGAGGATGATGGAGTGCCAAACGCCGGAGTGGATGGCTGGCCGAAGGCCCCAGCGGACGTCGCGCCAAACGCCGGGG
TGGATGGCTGGCCAAAGGCACCTGTGGACGTGGAGCCAAACGCTGGAGTGGACGGCTGGCCAAAGGCCCCCGTGGACGTC
GTGCCAAAAGGTGAGCCTCCTGTCTGTGCCCCAAACGTGGTGGTCGGGCTGCCAAATGGTTTCGGCGCGAACGGATTGGA
GGTGGAGGTGCTGGCCTGGCCAAATCCTGTCTGGGCCCCAAAAGGGTTGCTTGAGGTCTGGCCGAAAGGGCTAGTGGACG
ACTGCCCAAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis