Browse Element(s) Details


OsAffx.30847.1.S1_s_at

Description tigr:9640.m00609
TID=OsAffx.30847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0684011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06820Os.50347.2.S1_at11/1112+3316600..3318414expressed protein
LOC_Os12g06830OsAffx.31622.1.S1_at11/1112+3320135..3321062Citrate binding protein precursor, putative
LOC_Os12g06840OsAffx.30847.1.S1_s_at11/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06840Os.53000.1.S1_at10/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06850Os.9290.1.A1_at11/1112+3324751..3327804transcription elongation factor, putative, expressed
LOC_Os12g06860OsAffx.4416.1.S1_at1/1112+3334325..3335123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06870Os.10039.1.S1_at4/1112+3337354..3343209Nucleoporin autopeptidase family protein, expressed
LOC_Os12g06880OsAffx.31623.1.S1_at11/1112+3346355..3346828hypothetical protein
LOC_Os12g06890Os.10039.1.S1_at11/1112+3347757..3351994Nucleoporin autopeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30847.1.S1_s_at--224--4351Chr12:3322068..3322092 (25 bp)
CCACGGCAACCTGGAAGGGAAATCG
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--815--1751Chr12:3322060..3322084 (25 bp)
ACCTGGAAGGGAAATCGCGGCTCTA
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--124--7631Chr12:3322052..3322076 (25 bp)
GGGAAATCGCGGCTCTACAAGGACC
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--557--2271Chr12:3322049..3322073 (25 bp)
AAATCGCGGCTCTACAAGGACCCAT
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--638--8311Chr12:3322042..3322066 (25 bp)
GGCTCTACAAGGACCCATCACTGAG
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--196--2931Chr12:3322034..3322058 (25 bp)
AAGGACCCATCACTGAGCAACATCT
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--103--3571Chr12:3322027..3322051 (25 bp)
CATCACTGAGCAACATCTTCCTGAT
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--767--3331Chr12:3322024..3322048 (25 bp)
CACTGAGCAACATCTTCCTGATGAA
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--312--2451Chr12:3322001..3322025 (25 bp)
AACAATGGGAGGTACATGCTGCAGA
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--725--4611Chr12:3321929..3321953 (25 bp)
GCGAGGAAGCAGTCGACCAACCTGA
LOC_Os12g06840
OsAffx.30847.1.S1_s_at--1076--1511Chr12:3321922..3321946 (25 bp)
AGCAGTCGACCAACCTGAGGCAGTA
LOC_Os12g06840
Target Sequence 
CCACGGCAACCTGGAAGGGAAATCGCGGCTCTACAAGGACCCATCACTGAGCAACATCTTCCTGATGAACAATGGGAGGT
ACATGCTGCAGAAGATCAGGGGCTCGCCGGAGACGAACGCCATGCTCGGCGAGGCGTGGGCGAGGAAGCAGTCGACCAAC
CTGAGGCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30847.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis