Browse Element(s) Details


Os.50347.2.S1_at

Description gb:AK110577.1
DB_XREF= gi:32995786
TID=Os.50347.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-E05, full insert sequence.
FL= gb:AK110577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0682011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06780OsAffx.7506.1.S1_at11/1112+3292529..3293680expressed protein
LOC_Os12g06790OsAffx.7507.1.S1_at11/1112+3294339..3295272hypothetical protein
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06820Os.50347.2.S1_at11/1112+3316600..3318414expressed protein
LOC_Os12g06830OsAffx.31622.1.S1_at11/1112+3320135..3321062Citrate binding protein precursor, putative
LOC_Os12g06840OsAffx.30847.1.S1_s_at11/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06840Os.53000.1.S1_at10/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06850Os.9290.1.A1_at11/1112+3324751..3327804transcription elongation factor, putative, expressed
LOC_Os12g06860OsAffx.4416.1.S1_at1/1112+3334325..3335123retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06870Os.10039.1.S1_at4/1112+3337354..3343209Nucleoporin autopeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50347.2.S1_at--528--4511Chr12:3317163..3317187 (25 bp)
GCCGAGCCGGAGCAAGAGCCTCAAC
LOC_Os12g06820
Os.50347.2.S1_at--442--5991Chr12:3317136..3317160 (25 bp)
GAGACGCCGCCAGTAGAATCAGAGA
LOC_Os12g06820
Os.50347.2.S1_at--490--5491Chr12:3317100..3317124 (25 bp)
GAACAGGCGCCGGTGCAAGAGCCAC
LOC_Os12g06820
Os.50347.2.S1_at--199--8011Chr12:3317041..3317065 (25 bp)
GGAGGAGCAGCCAAAACCACGGTCC
LOC_Os12g06820
Os.50347.2.S1_at--622--1711Chr12:3317026..3317050 (25 bp)
ACCACGGTCCAGTGACAGCGAGGAT
LOC_Os12g06820
Os.50347.2.S1_at--1116--3451Chr12:3316800..3316824 (25 bp)
CAGTGAAGTGACTGACGCCGGTGTT
LOC_Os12g06820
Os.50347.2.S1_at--544--9451Chr12:3316754..3316778 (25 bp)
TCGGCGACGCGAACATGACGTAATT
LOC_Os12g06820
Os.50347.2.S1_at--374--6791Chr12:3316720..3316744 (25 bp)
GTTAGGCGTCTTTTGTGTGCTTTAC
LOC_Os12g06820
Os.50347.2.S1_at--980--7311Chr12:3316704..3316728 (25 bp)
GTGCTTTACGCGTTCGTTTCTTGGT
LOC_Os12g06820
Os.50347.2.S1_at--1145--10311Chr12:3316630..3316654 (25 bp)
TTTCAGCCTGAGCAACACAAGTATA
LOC_Os12g06820
Os.50347.2.S1_at--600--1191Chr12:3316611..3316635 (25 bp)
AGTATATGCATGTGCCCCTATTGGG
LOC_Os12g06820
Target Sequence 
GCCGAGCCGGAGCAAGAGCCTCAACCGGAGACGCCGCCAGTAGAATCAGAGACGCCGGCGGAAGAACAGGCGCCGGTGCA
AGAGCCACCGGCGGCGGACGAGACACCAGCCGCCGGCGAACCGGAGGAGCAGCCAAAACCACGGTCCAGTGACAGCGAGG
ATTACAGCACGTCGGGGGAAGAAGGAGACGGCGCGAACCGGGGCGGTGGCCGTCGCCGGCCCAGGGGGCAGGGGCCGCGG
CGGCGGCGGCGCAGGAGGCGCGGCGGGTTCCCGCTGGGGATGGTGGTGGGGCCCGCGGTGATCCTGCTCGCGCTCGCCGC
GGCGGCGGCCAGGAGGCGGCGGCAGCAGCGCGGGGCGGGCGGGCAGTGAAGTGACTGACGCCGGTGTTGCTCCGCTCGGT
CGCCGGAGTTCGGCGACGCGAACATGACGTAATTGTGTGACGTGTTAGGCGTCTTTTGTGTGCTTTACGCGTTCGTTTCT
TGGTGGCGTATTGTTGTGCTGTGTAAAACGGATTTTTCGTGTGATTGATAGTATTTCAGCCTGAGCAACACAAGTATATG
CATGTGCCCCTATTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50347.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis