Browse Element(s) Details


Os.15113.1.A1_at

Description gb:BQ907361
DB_XREF= gi:22306139
DB_XREF=P004H04
CLONE=P004H04
TID=Os.15113.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15113 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172469.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0680011/11ZW18 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06730OsAffx.7504.1.S1_at11/1112+3274132..3274808hypothetical protein
LOC_Os12g06740Os.12960.1.S1_at11/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06740OsAffx.31618.1.S1_at1/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06750OsAffx.31620.1.S1_at10/1112+3283378..3286501hypothetical protein
LOC_Os12g06750OsAffx.31621.1.S1_at1/1112+3283378..3286501hypothetical protein
LOC_Os12g06760OsAffx.31620.1.S1_at2/1112+3286850..3287385hypothetical protein
LOC_Os12g06770OsAffx.31621.1.S1_at10/1112+3288021..3289480hypothetical protein
LOC_Os12g06780OsAffx.7506.1.S1_at11/1112+3292529..3293680expressed protein
LOC_Os12g06790OsAffx.7507.1.S1_at11/1112+3294339..3295272hypothetical protein
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06820Os.50347.2.S1_at11/1112+3316600..3318414expressed protein
LOC_Os12g06830OsAffx.31622.1.S1_at11/1112+3320135..3321062Citrate binding protein precursor, putative
LOC_Os12g06840OsAffx.30847.1.S1_s_at11/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06840Os.53000.1.S1_at10/1112+3321231..3323645Exo70 exocyst complex subunit family protein, expressed
LOC_Os12g06850Os.9290.1.A1_at11/1112+3324751..3327804transcription elongation factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15113.1.A1_at--213--5051Chr12:3296077..3296101 (25 bp)
GCAGAGCAGCGCACATAGAGTTCCT
LOC_Os12g06800
Os.15113.1.A1_at--614--6052Chr04:15404069..15404524 (25 bp)
GAGTTCCTGGAGACTGACATCTACG
NONE
Os.15113.1.A1_at--406--2831Chr12:3296033..3296057 (25 bp)
AAGTTTATCATGTGGTCCTTCCCTG
LOC_Os12g06800
Os.15113.1.A1_at--648--7251Chr12:3296019..3296043 (25 bp)
GTCCTTCCCTGAACTTTTTCGATGA
LOC_Os12g06800
Os.15113.1.A1_at--454--10391Chr12:3296004..3296028 (25 bp)
TTTTCGATGACTGGGTTTTCCTCTT
LOC_Os12g06800
Os.15113.1.A1_at--973--8131Chr12:3295915..3295939 (25 bp)
GGAAAGTTTTCACCGCAATTCGACA
LOC_Os12g06800
Os.15113.1.A1_at--44--10671Chr12:3295867..3295891 (25 bp)
TTCCTAGCAGTAACGATTTTTCCAG
LOC_Os12g06800
Os.15113.1.A1_at--964--10371Chr12:3295850..3295874 (25 bp)
TTTTCCAGCCTGTTAGATTTGATTG
LOC_Os12g06800
Os.15113.1.A1_at--287--3111Chr12:3295821..3295845 (25 bp)
AATAGTCCTGATTTCTTCATTTCAT
LOC_Os12g06800
Os.15113.1.A1_at--768--9031Chr12:3295732..3295756 (25 bp)
TGCAGTTTAGGATGGCCAGCCAGCC
LOC_Os12g06800
Os.15113.1.A1_at--410--10371Chr12:3295661..3295685 (25 bp)
TTTTTTCACTCATCATCCCATGGTG
LOC_Os12g06800
Target Sequence 
GCAGAGCAGCGCACATAGAGTTCCTGGAGACTGACATCTACGCCAAGTTTATCATGTGGTCCTTCCCTGAACTTTTTCGA
TGACTGGGTTTTCCTCTTTGCACTTNTGGCCCTTATCAAACCAATAGTGCACTACTGACCAAGCAAGAAAGATTACCCTA
GCGGAAAGTTTTCACCGCAATTCGACACCAAGATTGGTAGCACTGTAAAGTTCCTAGCAGTAACGATTTTTCCAGCCTGT
TAGATTTGATTGTATAAATAGTCCTGATTTCTTCATTTCATTTCAACCATATAGTTCCTGTAGATTTTTGCNGTCAGTTA
TAATCCTTCTTGGTGTATGTAACACTGCAGTTTAGGATGGCCAGCCAGCCAGCCAGCCAGAGCTTATGTCAAAATAAGCA
TGATATGTGTTTGTTTTTTTTTCACTCATCATCCCATGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15113.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis