Browse Element(s) Details


OsAffx.31620.1.S1_at

Description tigr:9640.m00599
TID=OsAffx.31620.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0675010/11hypothetical protein
LOC_Os12g067602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06690OsAffx.29396.1.S1_x_at1/1112+3256421..3259803Transposable element protein, putative, Transposase_28
LOC_Os12g06690OsAffx.30787.3.S1_x_at1/1112+3256421..3259803Transposable element protein, putative, Transposase_28
LOC_Os12g06700NANA12+3261100..3261549hypothetical protein
LOC_Os12g06710NANA12+3263844..3267417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06720OsAffx.19675.1.S1_x_at1/1112+3267682..3270139retrotransposon protein, putative, unclassified
LOC_Os12g06720OsAffx.19675.1.S1_at1/1112+3267682..3270139retrotransposon protein, putative, unclassified
LOC_Os12g06730OsAffx.7504.1.S1_at11/1112+3274132..3274808hypothetical protein
LOC_Os12g06740Os.12960.1.S1_at11/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06740OsAffx.31618.1.S1_at1/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06750OsAffx.31620.1.S1_at10/1112+3283378..3286501hypothetical protein
LOC_Os12g06750OsAffx.31621.1.S1_at1/1112+3283378..3286501hypothetical protein
LOC_Os12g06760OsAffx.31620.1.S1_at2/1112+3286850..3287385hypothetical protein
LOC_Os12g06770OsAffx.31621.1.S1_at10/1112+3288021..3289480hypothetical protein
LOC_Os12g06780OsAffx.7506.1.S1_at11/1112+3292529..3293680expressed protein
LOC_Os12g06790OsAffx.7507.1.S1_at11/1112+3294339..3295272hypothetical protein
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31620.1.S1_at--726--9552Chr12:3286890..3286914 (25 bp)
TCTTCATGGTTCTTGTGATCATGTC
LOC_Os12g06760
OsAffx.31620.1.S1_at--1156--6092Chr12:3287233..3287257 (25 bp)
GAGTGCACCGTTGAAACGCCACACT
LOC_Os12g06760
OsAffx.31620.1.S1_at--421--4011Chr12:3284507..3284531 (25 bp)
CGTCCTCGGTTATTTGGGCACATGA
LOC_Os12g06750
OsAffx.31620.1.S1_at--597--1851Chr12:3284562..3284586 (25 bp)
ACGAAGCGACCACCGATTGCCTCAA
LOC_Os12g06750
OsAffx.31620.1.S1_at--1096--71NONE
ATTGCCTCAAGCGAAGGCACTCCTT
NONE
OsAffx.31620.1.S1_at--528--2971Chr12:3286350..3286374 (25 bp)
AATGGATCAAGGATGTGGCCAACCT
LOC_Os12g06750
OsAffx.31620.1.S1_at--754--791Chr12:3286362..3286386 (25 bp)
ATGTGGCCAACCTAGTGGGTGTCAC
LOC_Os12g06750
OsAffx.31620.1.S1_at--814--10071Chr12:3286374..3286398 (25 bp)
TAGTGGGTGTCACTCACTGCCAAAT
LOC_Os12g06750
OsAffx.31620.1.S1_at--466--1991Chr12:3286389..3286413 (25 bp)
ACTGCCAAATTGCTGTGCGGAACCC
LOC_Os12g06750
OsAffx.31620.1.S1_at--516--771Chr12:3286427..3286451 (25 bp)
ATGTCGACGTCCCATGTGGCGCCGA
LOC_Os12g06750
OsAffx.31620.1.S1_at--771--791Chr12:3286440..3286464 (25 bp)
ATGTGGCGCCGAGAGTTGCACAGTC
LOC_Os12g06750
Target Sequence 
TCTTCATGGTTCTTGTGATCATGTCNTGCGCCCTCACATCCACACTTGCTTGNCNGGGTGGGACGGAGTGCACCGTTGAA
ACGCCACACTGCACNATGGATTCNTGCAATGCAAAATGCAAGGCAGAGGCCANCAGCCGCAAGTGCAACAGNNTGACTGN
TAGTTGCCACAAATATGCTANACTTGAGAAGTGNTGCTGCACTTTTCANGCAAANNAAGTGGGAACCAAAGTCCCCCGTC
CTCGGTTATTTGGGCACATGAGGGCCCGCCACCGCTATGATGAGGCCCGCCACGAAGCGACCACCGATTGCCTCAAGCGA
AGGCACTCCTTCGTCATCCGCCACATCGGGCCGGCAGTGGCACTCCTGGGGGGCCAATGGATCAAGGATGTGGCCAACCT
AGTGGGTGTCACTCACTGCCAAATTGCTGTGCGGAACCCCTGCTCCGGCTCCATGTCGACGTCCCATGTGGCGCCGAGAG
TTGCACAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis