Browse Element(s) Details


Os.12960.1.S1_at

Description gb:AK120100.1
DB_XREF= gi:37989723
TID=Os.12960.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022J17, full insert sequence.
FL= gb:AK120100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0674011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06680OsAffx.22699.1.S1_x_at2/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06680OsAffx.28610.2.S1_x_at1/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06680OsAffx.31700.1.S1_at1/1112+3248860..3255073retrotransposon protein, putative, unclassified
LOC_Os12g06690OsAffx.29396.1.S1_x_at1/1112+3256421..3259803Transposable element protein, putative, Transposase_28
LOC_Os12g06690OsAffx.30787.3.S1_x_at1/1112+3256421..3259803Transposable element protein, putative, Transposase_28
LOC_Os12g06700NANA12+3261100..3261549hypothetical protein
LOC_Os12g06710NANA12+3263844..3267417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06720OsAffx.19675.1.S1_x_at1/1112+3267682..3270139retrotransposon protein, putative, unclassified
LOC_Os12g06720OsAffx.19675.1.S1_at1/1112+3267682..3270139retrotransposon protein, putative, unclassified
LOC_Os12g06730OsAffx.7504.1.S1_at11/1112+3274132..3274808hypothetical protein
LOC_Os12g06740Os.12960.1.S1_at11/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06740OsAffx.31618.1.S1_at1/1112+3279334..3282206F-box protein interaction domain containing protein, expressed
LOC_Os12g06750OsAffx.31620.1.S1_at10/1112+3283378..3286501hypothetical protein
LOC_Os12g06750OsAffx.31621.1.S1_at1/1112+3283378..3286501hypothetical protein
LOC_Os12g06760OsAffx.31620.1.S1_at2/1112+3286850..3287385hypothetical protein
LOC_Os12g06770OsAffx.31621.1.S1_at10/1112+3288021..3289480hypothetical protein
LOC_Os12g06780OsAffx.7506.1.S1_at11/1112+3292529..3293680expressed protein
LOC_Os12g06790OsAffx.7507.1.S1_at11/1112+3294339..3295272hypothetical protein
LOC_Os12g06800Os.15113.1.A1_at11/1112+3295525..3301801ZW18 protein, putative, expressed
LOC_Os12g06810Os.5167.1.S1_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.1.S1_x_at11/1112+3304194..3315475WD repeat domain 48, putative, expressed
LOC_Os12g06810Os.5167.2.S1_at8/1112+3304194..3315475WD repeat domain 48, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12960.1.S1_at--830--3091Chr12:3281502..3281526 (25 bp)
AATACTCTTGGCCATGTTTTTCTTC
LOC_Os12g06740
Os.12960.1.S1_at--189--991Chr12:3281829..3281853 (25 bp)
AGGAGTGAGACTTGCTGCTTCCATC
LOC_Os12g06740
Os.12960.1.S1_at--439--551Chr12:3281851..3281875 (25 bp)
ATCCCCAAATTGCAGCAGTTAGCCT
LOC_Os12g06740
Os.12960.1.S1_at--1035--6771Chr12:3281868..3281892 (25 bp)
GTTAGCCTGGTAACTTTCTGAAAGC
LOC_Os12g06740
Os.12960.1.S1_at--1146--2211Chr12:3281893..3281917 (25 bp)
ACAAGTGCTCGTTGTTTTTGATCAA
LOC_Os12g06740
Os.12960.1.S1_at--853--1991Chr12:3281939..3281963 (25 bp)
ACTCCTATGGTTATCTGTCTACTCA
LOC_Os12g06740
Os.12960.1.S1_at--795--10111Chr12:3281969..3281993 (25 bp)
TATGTTCGGCTATATATACTGGCAG
LOC_Os12g06740
Os.12960.1.S1_at--906--311Chr12:3281984..3282008 (25 bp)
ATACTGGCAGGAGTCGTCTAACAAA
LOC_Os12g06740
Os.12960.1.S1_at--815--1331Chr12:3282037..3282061 (25 bp)
AGAGGGCACGTTTATGATGTCATAT
LOC_Os12g06740
Os.12960.1.S1_at--885--6191Chr12:3282098..3282122 (25 bp)
GAGGAATTCTGGAACCTGAAAGCTT
LOC_Os12g06740
Os.12960.1.S1_at--194--431Chr12:3282148..3282172 (25 bp)
ATCATTTGCTCTGGTGAGGGTACAT
LOC_Os12g06740
Target Sequence 
AATACTCTTGGCCATGTTTTTCTTCTTGTCAATTGAGACGATGATTTTTCAGAGGATGAGAACCCTGCAGACCAGCAGCC
TAGAAGAGAGACTGAACCAAGCTCGCTCCTCCAAATTATTGATTCTTGGCACAATAGTAAGGATGTCTCTAGCAAAAAAA
ACTCGAGACATTGATGGGCTTGTTGATTGTTCAAGGAGTGAGACTTGCTGCTTCCATCCCCAAATTGCAGCAGTTAGCCT
GGTAACTTTCTGAAAGCACAAGTGCTCGTTGTTTTTGATCAATCATACATGAAACAAAATGGCACTCCTATGGTTATCTG
TCTACTCAAAATGTATGTTCGGCTATATATACTGGCAGGAGTCGTCTAACAAAGTAGCATTCTTTTGTTTTTCTCAGTTG
AAGAGGGCACGTTTATGATGTCATATGGTTAACAAAGTCTAGAGTTCTAGAGTTATAATGAGGAGGAATTCTGGAACCTG
AAAGCTTGGTAGTTTTTAGCCAAGATGTTATTATCATTTGCTCTGGTGAGGGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis