Browse Element(s) Details


OsAffx.31700.1.S1_at

Description tigr:9640.m01072
TID=OsAffx.31700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1128011/11hypothetical protein
LOC_Os01g347201/11retrotransposon protein, putative, unclassified
LOC_Os12g066801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11220OsAffx.19609.1.S1_at11/1112+6050369..6050962hypothetical protein
LOC_Os12g11230Os.10827.1.S1_x_at11/1112+6054284..6057571transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11230Os.46055.2.S1_x_at5/1112+6054284..6057571transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11240OsAffx.17922.1.S1_x_at5/1112+6058657..6061769hypothetical protein
LOC_Os12g11240Os.9100.1.S3_at2/1112+6058657..6061769hypothetical protein
LOC_Os12g11250Os.19439.2.S1_at11/1112+6062051..6063343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.1.S1_s_at11/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.7.S1_s_at11/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.1.S1_at7/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.2.S1_x_at5/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11260OsAffx.25936.5.S1_x_at2/1112+6065824..6069564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11270OsAffx.31699.1.S1_at11/1112+6071780..6072255hypothetical protein
LOC_Os12g11280OsAffx.31700.1.S1_at11/1112+6073580..6074221hypothetical protein
LOC_Os12g11290Os.46570.1.S1_at1/1112+6080036..6086708retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g11300OsAffx.22699.1.S1_x_at2/1112+6091529..6094213retrotransposon protein, putative, unclassified
LOC_Os12g11300OsAffx.16111.1.S1_at1/1112+6091529..6094213retrotransposon protein, putative, unclassified
LOC_Os12g11310OsAffx.3761.1.S1_x_at1/1112+6095569..6098384hypothetical protein
LOC_Os12g11310OsAffx.30421.1.S1_s_at1/1112+6095569..6098384hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31700.1.S1_at--653--2311Chr12:6073706..6073730 (25 bp)
AAAGGTGCTGCAACTTGTTCGGGTG
LOC_Os12g11280
OsAffx.31700.1.S1_at--781--3971Chr12:6073758..6073782 (25 bp)
CGGTCGAAGACCTTGCTGCAGATGG
LOC_Os12g11280
OsAffx.31700.1.S1_at--570--3251Chr12:6073783..6073807 (25 bp)
CAACCAGGAGCCATTGCAGTTCAAT
LOC_Os12g11280
OsAffx.31700.1.S1_at--262--411Chr12:6073818..6073842 (25 bp)
ATCAGATCGACTACGCTGTGCAGCA
LOC_Os12g11280
OsAffx.31700.1.S1_at--896--10171Chr12:6073915..6073939 (25 bp)
TATAGCCAAACACCAAGCCTCGGGA
LOC_Os12g11280
OsAffx.31700.1.S1_at--53--1651Chr12:6073930..6073954 (25 bp)
AGCCTCGGGACCAGTATATTTACCA
LOC_Os12g11280
OsAffx.31700.1.S1_at--847--2532Chr12:6073970..6073994 (25 bp)
AACTACAGGCCTTTGGTAACAGCAA
LOC_Os12g11280
OsAffx.31700.1.S1_at--1015--991Chr12:6074001..6074025 (25 bp)
AGGATACTTCCAATACACCACCAGT
LOC_Os12g11280
OsAffx.31700.1.S1_at--818--9651Chr12:6074026..6074050 (25 bp)
TCAGCCAATGGCTTCGGTTTCAGCT
LOC_Os12g11280
OsAffx.31700.1.S1_at--1010--411Chr12:6074068..6074092 (25 bp)
ATCATCGGCATCAAGACAGGTGGTT
LOC_Os12g11280
OsAffx.31700.1.S1_at--515--7912Chr12:6074164..6074188 (25 bp)
GGTTGCTGCAATGTTTCTACCAAAT
LOC_Os12g11280
Target Sequence 
AAAGGTGCTGCAACTTGTTCGGGTGATAAAGGTGATGTCTCTCAAGATGGTTCGGTCGAAGACCTTGCTGCAGATGGCAA
CCAGGAGCCATTGCAGTTCAATAACTTTCAAGATCAGATCGACTACGCTGTGCAGCATGCTCTGATCAACCAATCTGGAG
TACTGGTTAATACCTTAACAAACATGGTGAAGACTGTTGTCGATGGTTCTATAGCCAAACACCAAGCCTCGGGACCAGTA
TATTTACCAGGTGGTGTTTTCCCAAACTACAGGCCTTTGGTAACAGCAAATCAGCAGGATACTTCCAATACACCACCAGT
TCAGCCAATGGCTTCGGTTTCAGCTCCTGCACAAGCTACAACATCATCGGCATCAAGACAGGTGGTTAATCCTAGGTTGT
TGACCAGAGAACAGCCACAACATGCTAGGCAGAATGTCAATCGGCTGACTCAGGAACAGGTTGCTGCAATGTTTCTACCA
AAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis