Browse Element(s) Details


Os.19439.2.S1_at

Description gb:NM_195502.1
DB_XREF= gi:37532363
TID=Os.19439.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19439 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702B09.19 (P0702B09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0014J14.36), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3523011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g1125011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g1428011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g0879011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g3837010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g271309/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35180OsAffx.28760.2.S1_at11/117+21060794..21061274hypothetical protein
LOC_Os07g35180OsAffx.28760.1.S1_x_at4/117+21060794..21061274hypothetical protein
LOC_Os07g35190OsAffx.16564.1.S1_at11/117+21071481..21072026hypothetical protein
LOC_Os07g35200Os.29976.1.S1_at4/117+21072546..21073775hypothetical protein
LOC_Os07g35210OsAffx.25936.7.S1_s_at11/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.1.S1_s_at11/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.2.S1_x_at4/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.5.S1_x_at2/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35220NANA7+21082008..21082223hypothetical protein
LOC_Os07g35230Os.19439.2.S1_at11/117+21082887..21084877transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35230OsAffx.17922.1.S1_x_at5/117+21082887..21084877transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35240Os.10827.1.S1_x_at11/117+21085601..21092285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35240Os.46055.2.S1_x_at5/117+21085601..21092285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35250OsAffx.8939.1.S1_x_at4/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.8939.1.S1_at4/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.16289.1.S1_x_at1/117+21097764..21100200hypothetical protein
LOC_Os07g35250OsAffx.1436.1.S1_x_at1/117+21097764..21100200hypothetical protein
LOC_Os07g35260Os.27098.4.S1_x_at11/117+21102826..21107979Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19439.2.S1_at--729--8456Chr12:6062702..6062726 (25 bp)
TGGCCTGGATCAGTTCACGACCAAA
LOC_Os12g11250
Os.19439.2.S1_at--1122--2996Chr12:6062735..6062759 (25 bp)
AATGAGGCAGTGCAGGCTTACCCCT
LOC_Os12g11250
Os.19439.2.S1_at--106--16Chr12:6062888..6062912 (25 bp)
AGGTACCTACTTGTCGACTCCGGAT
LOC_Os12g11250
Os.19439.2.S1_at--534--5716Chr12:6062903..6062927 (25 bp)
GACTCCGGATTTCCTACCAGGATGG
LOC_Os12g11250
Os.19439.2.S1_at--877--6456Chr12:6062966..6062990 (25 bp)
GATCAACTTGCGGTCGAGGGAGCCC
LOC_Os12g11250
Os.19439.2.S1_at--997--5356Chr12:6063008..6063032 (25 bp)
GAAGAGACTTTCAACCATCGACACT
LOC_Os12g11250
Os.19439.2.S1_at--430--536Chr12:6063024..6063048 (25 bp)
ATCGACACTCCACGTTGCGAGGGAT
LOC_Os12g11250
Os.19439.2.S1_at--843--1555Chr12:6063148..6063172 (25 bp)
AGCTTTCGCTCTACACAACTTTAGG
LOC_Os12g11250
Os.19439.2.S1_at--1074--10156Chr12:6063194..6063218 (25 bp)
TATCGGTTCACTAATGCTCTCTACA
LOC_Os12g11250
Os.19439.2.S1_at--746--9176Chr12:6063231..6063255 (25 bp)
TGCCGCTGCTGAACGATTCATTCGA
LOC_Os12g11250
Os.19439.2.S1_at--138--1654Chr12:6063278..6063302 (25 bp)
AGCGAGGCCGCTATGTGCATGTTGC
LOC_Os12g11250
Target Sequence 
TGGCCTGGATCAGTTCACGACCAAAGGATTCTCAATGAGGCAGTGCAGGCTTACCCCTACGATTTCCCACGGGTACCGTT
AGGCAGGTACCTACTTGTCGACTCCGGATTTCCTACCAGGATGGGCTTCCTTGCACCGTACCCACATGTACGGTACCACA
GGGATCAACTTGCGGTCGAGGGAGCCCCGCCACCCGTAGGACGGGAAGAGACTTTCAACCATCGACACTCCACGTTGCGA
GGGATCGTGGAAAGACAATTTGGCATCGCAAAAAAGATGTGGAAAATATTGAAAGAAATCCCTTATTACCGAGATGANGA
CATCCCTGCACGCATCATTCATGCAGCTTTCGCTCTACACAACTTTAGGTTGGATAGTAAAGATCCGACCTATCGGTTCA
CTAATGCTCTCTACAACGGCAATCCAGTGCCGCTGCTGAACGATTCATTCGACCATATGTATTACGCAACAAATAGCGAG
GCCGCTATGTGCATGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19439.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis