Browse Element(s) Details


OsAffx.28760.1.S1_x_at

Description gb:NM_185868.1
DB_XREF= gi:34898821
TID=OsAffx.28760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1058_A12.6 (OJ1058_A12.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g351804/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35130Os.36434.1.S1_at11/117+21039506..21041698F-box domain containing protein, expressed
LOC_Os07g35140NANA7+21043424..21048285Protein kinase domain containing protein, expressed
LOC_Os07g35150OsAffx.21013.1.S1_at8/117+21049434..21050257hypothetical protein
LOC_Os07g35160OsAffx.28759.1.S1_x_at11/117+21052759..21053100hypothetical protein
LOC_Os07g35170NANA7+21056789..21057697hypothetical protein
LOC_Os07g35180OsAffx.28760.2.S1_at11/117+21060794..21061274hypothetical protein
LOC_Os07g35180OsAffx.28760.1.S1_x_at4/117+21060794..21061274hypothetical protein
LOC_Os07g35190OsAffx.16564.1.S1_at11/117+21071481..21072026hypothetical protein
LOC_Os07g35200Os.29976.1.S1_at4/117+21072546..21073775hypothetical protein
LOC_Os07g35210OsAffx.25936.7.S1_s_at11/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.1.S1_s_at11/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.2.S1_x_at4/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.5.S1_x_at2/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35220NANA7+21082008..21082223hypothetical protein
LOC_Os07g35230Os.19439.2.S1_at11/117+21082887..21084877transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35230OsAffx.17922.1.S1_x_at5/117+21082887..21084877transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35240Os.10827.1.S1_x_at11/117+21085601..21092285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35240Os.46055.2.S1_x_at5/117+21085601..21092285transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28760.1.S1_x_at--485--9651Chr07:21060915..21060939 (25 bp)
TCAGCTACCACGACGTCGGACGCGT
LOC_Os07g35180
OsAffx.28760.1.S1_x_at--856--4651Chr07:21060936..21060960 (25 bp)
GCGTGGAGCTGGAGATACAAGCTTC
LOC_Os07g35180
OsAffx.28760.1.S1_x_at--929--9831Chr07:21060951..21060975 (25 bp)
TACAAGCTTCATTAGCCGTTCGCAT
LOC_Os07g35180
OsAffx.28760.1.S1_x_at--194--151Chr07:21060961..21060985 (25 bp)
ATTAGCCGTTCGCATCTTCGACGAG
LOC_Os07g35180
OsAffx.28760.1.S1_x_at--724--3771Chr07:21062216..21062240 (25 bp)
CTCGTCGGCGTCTGACGCAAATAGG
NONE
OsAffx.28760.1.S1_x_at--980--1831Chr07:21062230..21062254 (25 bp)
ACGCAAATAGGCGAGGCTTTCCCAT
NONE
OsAffx.28760.1.S1_x_at--109--10091Chr07:21062237..21062261 (25 bp)
TAGGCGAGGCTTTCCCATGCCGCTA
NONE
OsAffx.28760.1.S1_x_at--372--3811Chr07:21062323..21062347 (25 bp)
CTCCGCTTCGATGGCATGTTGCTCA
NONE
OsAffx.28760.1.S1_x_at--981--10591Chr07:21062329..21062353 (25 bp)
TTCGATGGCATGTTGCTCAGGCAAG
NONE
OsAffx.28760.1.S1_x_at--699--6671Chr07:21062340..21062364 (25 bp)
GTTGCTCAGGCAAGAGCGCGAGTAT
NONE
OsAffx.28760.1.S1_x_at--693--5171Chr07:21062349..21062373 (25 bp)
GCAAGAGCGCGAGTATGACGACGCC
NONE
Target Sequence 
TCAGCTACCACGACGTCGGACGCGTGGAGCTGGAGATACAAGCTTCATTAGCCGTTCGCATCTTCGACGAGCCTCGTCGG
CGTCTGACGCAAATAGGCGAGGCTTTCCCATGCCGCTACCCGATCTCACCGTCGCCCTGCGTGGTGGAGGGCAAAGGGCG
GGGATCCCCTTTCGCCTACCTCCGCTTCGATGGCATGTTGCTCAGGCAAGAGCGCGAGTATGACGACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28760.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis