Browse Element(s) Details


OsAffx.28759.1.S1_x_at

Description tigr:9635.m03471
TID=OsAffx.28759.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3516011/11hypothetical protein
LOC_Os05g072701/11LOB domain protein 13, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35110OsAffx.28757.1.S1_at11/117+21027740..21030345Leucine Rich Repeat family protein
LOC_Os07g35110Os.36434.1.S1_at2/117+21027740..21030345Leucine Rich Repeat family protein
LOC_Os07g35120NANA7+21033702..21034864hypothetical protein
LOC_Os07g35130Os.36434.1.S1_at11/117+21039506..21041698F-box domain containing protein, expressed
LOC_Os07g35140NANA7+21043424..21048285Protein kinase domain containing protein, expressed
LOC_Os07g35150OsAffx.21013.1.S1_at8/117+21049434..21050257hypothetical protein
LOC_Os07g35160OsAffx.28759.1.S1_x_at11/117+21052759..21053100hypothetical protein
LOC_Os07g35170NANA7+21056789..21057697hypothetical protein
LOC_Os07g35180OsAffx.28760.2.S1_at11/117+21060794..21061274hypothetical protein
LOC_Os07g35180OsAffx.28760.1.S1_x_at4/117+21060794..21061274hypothetical protein
LOC_Os07g35190OsAffx.16564.1.S1_at11/117+21071481..21072026hypothetical protein
LOC_Os07g35200Os.29976.1.S1_at4/117+21072546..21073775hypothetical protein
LOC_Os07g35210OsAffx.25936.7.S1_s_at11/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.1.S1_s_at11/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.2.S1_x_at4/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g35210OsAffx.25936.5.S1_x_at2/117+21077410..21080448transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0048441biological_processpetal development
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28759.1.S1_x_at--728--4031Chr07:21052859..21052883 (25 bp)
CGTTCCACATGTGCGGGATGGTGCA
LOC_Os07g35160
OsAffx.28759.1.S1_x_at--916--9031Chr07:21052880..21052904 (25 bp)
TGCAGGGTCGGTTCGCTCCCAACAG
LOC_Os07g35160
OsAffx.28759.1.S1_x_at--561--10591Chr07:21052891..21052915 (25 bp)
TTCGCTCCCAACAGCTCGTACGAGG
LOC_Os07g35160
OsAffx.28759.1.S1_x_at--611--9392Chr07:21052906..21052930 (25 bp)
TCGTACGAGGCCAACCTGCGGCGTG
LOC_Os07g35160
OsAffx.28759.1.S1_x_at--339--1871Chr07:21052910..21052934 (25 bp)
ACGAGGCCAACCTGCGGCGTGTCGC
LOC_Os07g35160
OsAffx.28759.1.S1_x_at--491--3351Chr07:21052938..21052962 (25 bp)
CACGCTGCCAGCCATGGTGGCGAAC
LOC_Os07g35160
OsAffx.28759.1.S1_x_at--808--1692Chr07:21092088..21092112 (25 bp)
AGCCATGGTGGCGAACGGATCCTCC
NONE
OsAffx.28759.1.S1_x_at--364--4251Chr07:21052982..21053006 (25 bp)
CCGGCGTCGATGTCCTCGTCGGCGA
LOC_Os07g35160
OsAffx.28759.1.S1_x_at--971--8371Chr07:21053002..21053026 (25 bp)
GGCGAGCGGCCCGACCAGATCTCCA
LOC_Os07g35160
OsAffx.28759.1.S1_x_at--1032--1271Chr07:21053018..21053042 (25 bp)
AGATCTCCACGTCGGCCTTCTGCGG
LOC_Os07g35160
OsAffx.28759.1.S1_x_at--1137--10591Chr07:21053035..21053059 (25 bp)
TTCTGCGGCGCCAACTCGTCGGCGG
LOC_Os07g35160
Target Sequence 
CGTTCCACATGTGCGGGATGGTGCAGGGTCGGTTCGCTCCCAACAGCTCGTACGAGGCCAACCTGCGGCGTGTCGCCGCC
ACGCTGCCAGCCATGGTGGCGAACGGATCCTCCTCCTCCTCCTCCGGCGTCGATGTCCTCGTCGGCGAGCGGCCCGACCA
GATCTCCACGTCGGCCTTCTGCGGCGCCAACTCGTCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28759.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis