Browse Element(s) Details


OsAffx.21013.1.S1_at

Description gb:XM_354006.1
DB_XREF= gi:35189445
GEN=OJ1058_A12.1
TID=OsAffx.21013.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g351508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35100Os.28346.3.S1_x_at7/117+21020134..21026064retrotransposon protein, putative, unclassified
LOC_Os07g35110OsAffx.28757.1.S1_at11/117+21027740..21030345Leucine Rich Repeat family protein
LOC_Os07g35110Os.36434.1.S1_at2/117+21027740..21030345Leucine Rich Repeat family protein
LOC_Os07g35120NANA7+21033702..21034864hypothetical protein
LOC_Os07g35130Os.36434.1.S1_at11/117+21039506..21041698F-box domain containing protein, expressed
LOC_Os07g35140NANA7+21043424..21048285Protein kinase domain containing protein, expressed
LOC_Os07g35150OsAffx.21013.1.S1_at8/117+21049434..21050257hypothetical protein
LOC_Os07g35160OsAffx.28759.1.S1_x_at11/117+21052759..21053100hypothetical protein
LOC_Os07g35170NANA7+21056789..21057697hypothetical protein
LOC_Os07g35180OsAffx.28760.2.S1_at11/117+21060794..21061274hypothetical protein
LOC_Os07g35180OsAffx.28760.1.S1_x_at4/117+21060794..21061274hypothetical protein
LOC_Os07g35190OsAffx.16564.1.S1_at11/117+21071481..21072026hypothetical protein
LOC_Os07g35200Os.29976.1.S1_at4/117+21072546..21073775hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21013.1.S1_at--481--4411Chr07:21050198..21050222 (25 bp)
GCCAGCGAATTCTCTTGGCCCGAGG
LOC_Os07g35150
OsAffx.21013.1.S1_at--718--10871Chr07:21050184..21050208 (25 bp)
TTGGCCCGAGGCAACACAATTTGTT
LOC_Os07g35150
OsAffx.21013.1.S1_at--722--8391Chr07:21050182..21050206 (25 bp)
GGCCCGAGGCAACACAATTTGTTAG
LOC_Os07g35150
OsAffx.21013.1.S1_at--816--6191Chr07:21050177..21050201 (25 bp)
GAGGCAACACAATTTGTTAGCTGAT
LOC_Os07g35150
OsAffx.21013.1.S1_at--1153--8211Chr07:21050175..21050199 (25 bp)
GGCAACACAATTTGTTAGCTGATCG
LOC_Os07g35150
OsAffx.21013.1.S1_at--238--8791Chr07:21050167..21050187 (21 bp)
TGTTAGCTGATCGAGAGCAGGACAT
LOC_Os07g35150
OsAffx.21013.1.S1_at--359--4751NONE
GCTGATCGAGAGCAGGACATATTTT
NONE
OsAffx.21013.1.S1_at--561--6391NONE
GATCGAGAGCAGGACATATTTTGTG
NONE
OsAffx.21013.1.S1_at--194--6011NONE
GAGAGCAGGACATATTTTGTGGAAA
NONE
OsAffx.21013.1.S1_at--450--3471Chr07:21049484..21049507 (24 bp)
CAGGACATATTTTGTGGAAAGGACT
LOC_Os07g35150
OsAffx.21013.1.S1_at--854--8151Chr07:21049469..21049493 (25 bp)
GGAAAGGACTTATCTGTTGAGATGA
LOC_Os07g35150
Target Sequence 
GCCAGCGAATTCTCTTGGCCCGAGGCAACACAATTTGTTAGCTGATCGAGAGCAGGACATATTTTGTGGAAAGGACTTAT
CTGTTGAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis