Browse Element(s) Details


OsAffx.28757.1.S1_at

Description tigr:9635.m03466
TID=OsAffx.28757.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3511011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35060Os.33087.1.S1_at11/117+21001135..21003048F-box domain containing protein, expressed
LOC_Os07g35070NANA7+21006712..21008162F-box protein interaction domain containing protein
LOC_Os07g35080NANA7+21014092..21014499transposon protein, putative, unclassified
LOC_Os07g35090NANA7+21017082..21017711transposon protein, putative, unclassified
LOC_Os07g35100Os.28346.3.S1_x_at7/117+21020134..21026064retrotransposon protein, putative, unclassified
LOC_Os07g35110OsAffx.28757.1.S1_at11/117+21027740..21030345Leucine Rich Repeat family protein
LOC_Os07g35110Os.36434.1.S1_at2/117+21027740..21030345Leucine Rich Repeat family protein
LOC_Os07g35120NANA7+21033702..21034864hypothetical protein
LOC_Os07g35130Os.36434.1.S1_at11/117+21039506..21041698F-box domain containing protein, expressed
LOC_Os07g35140NANA7+21043424..21048285Protein kinase domain containing protein, expressed
LOC_Os07g35150OsAffx.21013.1.S1_at8/117+21049434..21050257hypothetical protein
LOC_Os07g35160OsAffx.28759.1.S1_x_at11/117+21052759..21053100hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0010200biological_processresponse to chitin
GO:0030154biological_processcell differentiation
GO:0050832biological_processdefense response to fungi
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28757.1.S1_at--126--5951Chr07:21029307..21029331 (25 bp)
GAGCACATACAATTGTGCACCAACA
LOC_Os07g35110
OsAffx.28757.1.S1_at--266--5071Chr07:21029323..21029347 (25 bp)
GCACCAACAAGAAACTACACAACAT
LOC_Os07g35110
OsAffx.28757.1.S1_at--298--9851Chr07:21029338..21029362 (25 bp)
TACACAACATTTTAGACTTCAAAGG
LOC_Os07g35110
OsAffx.28757.1.S1_at--497--2892Chr10:16698645..16698664 (20 bp)
AAGGTTTTAGTGCTCGTCAGACGTC
NONE
OsAffx.28757.1.S1_at--1130--3411Chr07:21029875..21029899 (25 bp)
CAGACGTCAGGCATACCTCCTGGGA
LOC_Os07g35110
OsAffx.28757.1.S1_at--403--1971Chr07:21029916..21029940 (25 bp)
ACTGCAGTACTTGTTCTTGTACACC
LOC_Os07g35110
OsAffx.28757.1.S1_at--957--2171Chr07:21030066..21030090 (25 bp)
AACTAACTTAGTCCTGATGGCGAAC
LOC_Os07g35110
OsAffx.28757.1.S1_at--71--1151Chr07:21030075..21030099 (25 bp)
AGTCCTGATGGCGAACAACTTCTCC
LOC_Os07g35110
OsAffx.28757.1.S1_at--747--9491Chr07:21030095..21030119 (25 bp)
TCTCCGGCGAGATACGAGCAAGCCT
LOC_Os07g35110
OsAffx.28757.1.S1_at--592--10611Chr07:21030154..21030178 (25 bp)
TTCGAGAACAATCTCTCCGGCCAGC
LOC_Os07g35110
OsAffx.28757.1.S1_at--1091--7692Chr07:21030254..21030278 (25 bp)
GGGTCTGCGACAACTTCATTATCAC
LOC_Os07g35110
Target Sequence 
GAGCACATACAATTGTGCACCAACAAGAAACTACACAACATTTTAGACTTCAAAGGTTTTAGTGCTCGTCAGACGTCAGG
CATACCTCCTGGGATCTGGAACCTTCCAAAACTGCAGTACTTGTTCTTGTACACCAACCAGCTCACCGGCGACGTCGTCG
TCAATGGCAAGATTGGAGCAGCAAGCTTAATTTATCTGGACATATCTGAGAACCAGCTTACTGGAACGATCCCAGAGAGC
TTTGGAAGTTTGATGAACCTAACTAACTTAGTCCTGATGGCGAACAACTTCTCCGGCGAGATACGAGCAAGCCTTGCTCA
GCTTCCATCGCTGGTGATAATGAAGCTGTTCGAGAACAATCTCTCCGGCCAGCTTCCGGCGGAGCTCGGCAAGCACTCAC
CATTTCTGAGAGACATCGAGGTCGACAACAACGACCTCACCGAGCCGGGGGTCTGCGACAACTTCATTATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis