Browse Element(s) Details


Os.33087.1.S1_at

Description gb:AK101804.1
DB_XREF= gi:32987013
TID=Os.33087.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1131_E05.21 (OJ1131_E05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066K01, full insert sequence.
FL= gb:AK101804.1 gb:AK063926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3506011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35020Os.10626.4.A1_s_at11/117+20978248..20978679hypothetical protein
LOC_Os07g35020Os.40531.1.A1_x_at3/117+20978248..20978679hypothetical protein
LOC_Os07g35030NANA7+20983126..20983554hypothetical protein
LOC_Os07g35040Os.35344.18.S1_x_at10/117+20990505..20996401transposon protein, putative, Mutator sub-class
LOC_Os07g35040Os.35344.3.S1_x_at9/117+20990505..20996401transposon protein, putative, Mutator sub-class
LOC_Os07g35040OsAffx.22940.5.S1_x_at3/117+20990505..20996401transposon protein, putative, Mutator sub-class
LOC_Os07g35050Os.33087.2.S1_at11/117+20997635..20999454F-box domain containing protein, expressed
LOC_Os07g35060Os.33087.1.S1_at11/117+21001135..21003048F-box domain containing protein, expressed
LOC_Os07g35070NANA7+21006712..21008162F-box protein interaction domain containing protein
LOC_Os07g35080NANA7+21014092..21014499transposon protein, putative, unclassified
LOC_Os07g35090NANA7+21017082..21017711transposon protein, putative, unclassified
LOC_Os07g35100Os.28346.3.S1_x_at7/117+21020134..21026064retrotransposon protein, putative, unclassified
LOC_Os07g35110OsAffx.28757.1.S1_at11/117+21027740..21030345Leucine Rich Repeat family protein
LOC_Os07g35110Os.36434.1.S1_at2/117+21027740..21030345Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33087.1.S1_at--607--5191Chr07:21002597..21002621 (25 bp)
GCAATCTTGGACATGACTCCTCGGA
LOC_Os07g35060
Os.33087.1.S1_at--224--8531Chr07:21002604..21002628 (25 bp)
TGGACATGACTCCTCGGATCCATAT
LOC_Os07g35060
Os.33087.1.S1_at--584--7971Chr07:21002619..21002643 (25 bp)
GGATCCATATCTACCGTATGTTCCA
LOC_Os07g35060
Os.33087.1.S1_at--401--1151Chr07:21002654..21002678 (25 bp)
AGTCATTTGCAGATGGGCGCTAACA
LOC_Os07g35060
Os.33087.1.S1_at--895--1591Chr07:21002684..21002708 (25 bp)
AGCGTCGGCTCCACTTTTACTACTG
LOC_Os07g35060
Os.33087.1.S1_at--671--9892Chr07:21002701..21002725 (25 bp)
TACTACTGCGAAAACATCCTTTTGC
LOC_Os07g35060
Os.33087.1.S1_at--1012--3651Chr07:21002719..21002743 (25 bp)
CTTTTGCACTAGGAGAACCAAGCTT
LOC_Os07g35060
Os.33087.1.S1_at--511--1031Chr07:21002785..21002809 (25 bp)
AGGTCTGTTTTATTGTACTTGAATT
LOC_Os07g35060
Os.33087.1.S1_at--527--5291Chr07:21002875..21002899 (25 bp)
GAAGGTTGTCTTGTTTTATTCTACT
LOC_Os07g35060
Os.33087.1.S1_at--1115--7711Chr07:21002900..21002924 (25 bp)
GGTGTTTACCCTATTATAGTGAAGC
LOC_Os07g35060
Os.33087.1.S1_at--174--8971Chr07:21002946..21002970 (25 bp)
TGAAAGGTCTTTTGACTGTATCAGC
LOC_Os07g35060
Target Sequence 
GCAATCTTGGACATGACTCCTCGGATCCATATCTACCGTATGTTCCACTCTTTTATGAGTCATTTGCAGATGGGCGCTAA
CATGCNGAGCGTCGGCTCCACTTTTACTACTGCGAAAACATCCTTTTGCACTAGGAGAACCAAGCTTAGAGTGGGCAGAA
AGCCATTNTNTAGTACAAGGATTTNGCAAGGTCTGTTTTATTGTACTTGAATTAAGAAGTCAGATGGTAGTACTAGTACT
ATGTAGATTGTCTTTTGGAAGGTTTGTNCTGTTACTCTGAAGGTTGTCTTGTTTTATTCTACTGGTGTTTACCCTATTAT
AGTGAAGCTTTGATGTNATATGCTAACNCTGAAAGGTCTTTTGACTGTATCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis