Browse Element(s) Details


Os.9100.1.S3_at

Description gb:AK068222.1
DB_XREF= gi:32978240
TID=Os.9100.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9100 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013138E23, full insert sequence.
FL= gb:AK068222.1 gb:AK102409.1 gb:AK121119.1 gb:AK068425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1784011/11HEAT repeat family protein, expressed
LOC_Os01g592502/11expressed protein
LOC_Os12g112402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17790NANA6+10316963..10318576retrotransposon protein, putative, unclassified
LOC_Os06g17800NANA6+10318861..10322036hypothetical protein
LOC_Os06g17810Os.31312.2.S1_x_at3/116+10324438..10328084retrotransposon protein, putative, unclassified
LOC_Os06g17810Os.31312.5.S1_x_at3/116+10324438..10328084retrotransposon protein, putative, unclassified
LOC_Os06g17820OsAffx.22492.1.S1_x_at1/116+10328408..10334563retrotransposon protein, putative, unclassified
LOC_Os06g17820OsAffx.22492.1.S1_at1/116+10328408..10334563retrotransposon protein, putative, unclassified
LOC_Os06g17830Os.55102.1.S1_at5/116+10340202..10342173oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os06g17840Os.9100.1.S2_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S1_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S3_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17850NANA6+10360910..10363598hypothetical protein
LOC_Os06g17860OsAffx.27688.1.S1_at11/116+10364751..10367451hypothetical protein
LOC_Os06g17870OsAffx.27689.1.S1_s_at11/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17870OsAffx.27689.1.S1_at9/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17880Os.50486.1.S1_at11/116+10374847..10379262NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g17890OsAffx.15477.1.S1_at8/116+10381005..10382012hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9100.1.S3_at--1009--6191Chr06:10343820..10343843 (24 bp)
GAGGAATCTGACAACGAGACTCTTA
LOC_Os06g17840
Os.9100.1.S3_at--277--2091Chr06:10343674..10343698 (25 bp)
ACATAGGCTTTGCTTTCTCGGTTGA
LOC_Os06g17840
Os.9100.1.S3_at--744--7911Chr06:10343655..10343679 (25 bp)
GGTTGATTATTCTTCGTAGGATGCA
LOC_Os06g17840
Os.9100.1.S3_at--510--6331Chr06:10343636..10343660 (25 bp)
GATGCAGATTTCACGGGCAGCGGAT
LOC_Os06g17840
Os.9100.1.S3_at--349--7951Chr06:10343603..10343627 (25 bp)
GGATATCTCATTTAATTGACCTTGG
LOC_Os06g17840
Os.9100.1.S3_at--20--6331Chr06:10343485..10343509 (25 bp)
GATGCTAGAACTTGTTTCCAACTTA
LOC_Os06g17840
Os.9100.1.S3_at--12--4951Chr06:10343450..10343474 (25 bp)
GCATTGTGCCCTGGAATTTCATTGT
LOC_Os06g17840
Os.9100.1.S3_at--63--10151Chr06:10343426..10343450 (25 bp)
TATACGTATCCTTGAGAGGGCCACA
LOC_Os06g17840
Os.9100.1.S3_at--274--6131Chr06:10343411..10343435 (25 bp)
GAGGGCCACAGGTCATGTAACATAT
LOC_Os06g17840
Os.9100.1.S3_at--605--2973Chr12:6059726..6059750 (25 bp)
AATGGTTCTTGGATTGTACTGTACA
LOC_Os12g11240
Os.9100.1.S3_at--162--9933Chr12:6059742..6059766 (25 bp)
TACTGTACAACTAGAATGGGCATCC
LOC_Os12g11240
Target Sequence 
GAGGAATCTGACAACGAGACTCTTAGTGTCTGGAAAAAACGCACAGCTAAAGCAACATAGGCTTTGCTTTCTCGGTTGAT
TATTCTTCGTAGGATGCAGATTTCACGGGCAGCGGATGGGGATGTGGATATCTCATTTAATTGACCTTGGAATTGACAGT
TGTGATGTAGAAAATGTTCTTTGCAATAGCAACAGGTTTAGTATAGAAGAGCAGTGGAATAGGATTTGCTTCTAATGTTA
CTAGATGCTAGAACTTGTTTCCAACTTAATTAGCTATGGCATTGTGCCCTGGAATTTCATTGTATACGTATCCTTGAGAG
GGCCACAGGTCATGTAACATATCCGTTTAGCATTATTTTGCAGGAATAGTGATTATGTGTTAAAACTCATGTAGAAATGT
TGTAAACAATAAACAATGGTTCTTGGATTGTACTGTACAACTAGAATGGGCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9100.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis