Browse Element(s) Details


OsAffx.27688.1.S1_at

Description tigr:9634.m01773
TID=OsAffx.27688.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1786011/11hypothetical protein
LOC_Os10g020601/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17830Os.55102.1.S1_at5/116+10340202..10342173oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os06g17840Os.9100.1.S2_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S1_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S3_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17850NANA6+10360910..10363598hypothetical protein
LOC_Os06g17860OsAffx.27688.1.S1_at11/116+10364751..10367451hypothetical protein
LOC_Os06g17870OsAffx.27689.1.S1_s_at11/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17870OsAffx.27689.1.S1_at9/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17880Os.50486.1.S1_at11/116+10374847..10379262NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g17890OsAffx.15477.1.S1_at8/116+10381005..10382012hypothetical protein
LOC_Os06g17900OsAffx.15478.1.S1_at2/116+10386510..10389466NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27688.1.S1_at--162--2171Chr06:10367397..10367421 (25 bp)
ACACCGGTTAGATTGGCAACAAGGC
LOC_Os06g17860
OsAffx.27688.1.S1_at--1101--6591Chr06:10367387..10367411 (25 bp)
GATTGGCAACAAGGCGCGGTCAAAC
LOC_Os06g17860
OsAffx.27688.1.S1_at--745--891Chr06:10367376..10367400 (25 bp)
AGGCGCGGTCAAACTAGGGCAATCA
LOC_Os06g17860
OsAffx.27688.1.S1_at--385--10077Chr10:660470..660492 (23 bp)
TAGGGCAATCAAGCCGGTCAGACCG
LOC_Os10g02060
OsAffx.27688.1.S1_at--1130--1371Chr06:10367343..10367367 (25 bp)
AGACCGATCTCCATCAGCTTCGAAG
LOC_Os06g17860
OsAffx.27688.1.S1_at--703--6411Chr06:10367343..10367362 (20 bp)
GATCTCCATCAGCTTCGAAGAGCAT
LOC_Os06g17860
OsAffx.27688.1.S1_at--1127--2771Chr06:10365607..10365630 (24 bp)
AAGAGCATCCAGGTGGCAGCGTCCA
LOC_Os06g17860
OsAffx.27688.1.S1_at--316--5511Chr06:10365552..10365576 (25 bp)
GAACAAAAATACTTACCTCCAGGAG
LOC_Os06g17860
OsAffx.27688.1.S1_at--964--2931Chr06:10365488..10365551 (25 bp)
AAGGCATTGGAATCGGTCTCTGTCT
LOC_Os06g17860
OsAffx.27688.1.S1_at--759--3051Chr06:10364791..10364811 (21 bp)
AATCGGTCTCTGTCTTGGTGGCTTC
LOC_Os06g17860
OsAffx.27688.1.S1_at--531--8733Chr04:25126347..25126371 (25 bp)
TGTCTTGGTGGCTTCTGAACAGAGG
NONE
Target Sequence 
ACACCGGTTAGATTGGCAACAAGGCGCGGTCAAACTAGGGCAATCAAGCCGGTCAGACCGATCTCCATCAGCTTCGAAGA
GCATCCAGGTGGCAGCGTCCACGTCATCTACCAAAGAAATATAATCAAGTGGAACAAAAATACTTACCTCCAGGAGAAGG
CATTGGAATCGGTCTCTGTCTTGGTGGCTTCTGAACAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis