Browse Element(s) Details


Os.55102.1.S1_at

Description gb:AK107495.1
DB_XREF= gi:32992704
TID=Os.55102.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D07, full insert sequence.
FL= gb:AK107495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g178305/11oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17790NANA6+10316963..10318576retrotransposon protein, putative, unclassified
LOC_Os06g17800NANA6+10318861..10322036hypothetical protein
LOC_Os06g17810Os.31312.2.S1_x_at3/116+10324438..10328084retrotransposon protein, putative, unclassified
LOC_Os06g17810Os.31312.5.S1_x_at3/116+10324438..10328084retrotransposon protein, putative, unclassified
LOC_Os06g17820OsAffx.22492.1.S1_x_at1/116+10328408..10334563retrotransposon protein, putative, unclassified
LOC_Os06g17820OsAffx.22492.1.S1_at1/116+10328408..10334563retrotransposon protein, putative, unclassified
LOC_Os06g17830Os.55102.1.S1_at5/116+10340202..10342173oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os06g17840Os.9100.1.S2_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S1_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S3_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17850NANA6+10360910..10363598hypothetical protein
LOC_Os06g17860OsAffx.27688.1.S1_at11/116+10364751..10367451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55102.1.S1_at--702--6311Chr06:10341733..10341757 (25 bp)
GATGACGAGCCGCTGTATGGACCTA
LOC_Os06g17830
Os.55102.1.S1_at--324--1351Chr06:10341762..10341786 (25 bp)
AGAGATAGCATCTGTCACCCTCGGA
LOC_Os06g17830
Os.55102.1.S1_at--1141--111Chr06:10342040..10342064 (25 bp)
ATTCTTTCCTCCTGAAGCATGGGTC
LOC_Os06g17830
Os.55102.1.S1_at--889--691Chr06:10342075..10342099 (25 bp)
ATGAGAGGCTATACCCAACGGGACT
LOC_Os06g17830
Os.55102.1.S1_at--835--991Chr06:10342141..10342165 (25 bp)
AGGATCAATCTGACTTTCCGGCGAG
LOC_Os06g17830
Os.55102.1.S1_at--599--10011Chr06:10342171..10342195 (25 bp)
TAGCATCTTTGTGTACAGCGTCGGA
NONE
Os.55102.1.S1_at--121--10711Chr06:10342235..10342259 (25 bp)
TTGCTGGCGCGTACACTAGAGACTA
NONE
Os.55102.1.S1_at--427--971Chr06:10342315..10342339 (25 bp)
AGGAGCGATGGTGTTTGCCACTGTT
NONE
Os.55102.1.S1_at--847--6851Chr06:10342337..10342361 (25 bp)
GTTTGCATGGTAGCGATCTTATCTT
NONE
Os.55102.1.S1_at--165--5691Chr06:10342418..10342442 (25 bp)
GACTTGATGTTTGTGTTCTGCTACT
NONE
Os.55102.1.S1_at--43--6731Chr06:10342432..10342456 (25 bp)
GTTCTGCTACTCTGTTAGTGCATCA
NONE
Target Sequence 
GATGACGAGCCGCTGTATGGACCTACCCCAGAGATAGCATCTGTCACCCTCGGATGCGAACGAGAGTTCTTACTTAGAAA
GAAGCCGACGAAATCGCAAGCTTCACTTGGATCTGGGGAAGTTGCGCCGAAGCGGCTCAAGGTCAGTGCTCCTCAGCAGC
ATTCTTTCCTCCTGAAGCATGGGTCGCTGCTTGTGATGAGAGGCTATACCCAACGGGACTGGCAGCACTCGGTCCCGAAA
CGAGCTAAAGCAAGCTCACCGAGGATCAATCTGACTTTCCGGCGAGTGCTGTAGCATCTTTGTGTACAGCGTCGGAGGCA
GCTTCCGGGCAGGTCGGGCGGCTGCCTGGGCTCCATTGCTGGCGCGTACACTAGAGACTATCTATAACATGTATATAAAA
ATTAATAGATCACAGGAAAACACTATTAGTCACACAGGAGCGATGGTGTTTGCCACTGTTTGCATGGTAGCGATCTTATC
TTTGCCTCCCTCGATCTTTTGCGATTGTGCAAACTTATCACGGACATTGTTTTGGGGAGACTTGATGTTTGTGTTCTGCT
ACTCTGTTAGTGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis