Browse Element(s) Details


OsAffx.27689.1.S1_s_at

Description tigr:9634.m01774
TID=OsAffx.27689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF045033 nitrate-induced NOI protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1787011/11nitrate-induced NOI protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17840Os.9100.1.S2_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S1_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17840Os.9100.1.S3_at11/116+10343191..10357302HEAT repeat family protein, expressed
LOC_Os06g17850NANA6+10360910..10363598hypothetical protein
LOC_Os06g17860OsAffx.27688.1.S1_at11/116+10364751..10367451hypothetical protein
LOC_Os06g17870OsAffx.27689.1.S1_s_at11/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17870OsAffx.27689.1.S1_at9/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17880Os.50486.1.S1_at11/116+10374847..10379262NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g17890OsAffx.15477.1.S1_at8/116+10381005..10382012hypothetical protein
LOC_Os06g17900OsAffx.15478.1.S1_at2/116+10386510..10389466NB-ARC domain containing protein
LOC_Os06g17910OsAffx.15478.3.S1_at11/116+10396098..10398254NBS-LRR disease resistance protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0010167biological_processresponse to nitrate
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27689.1.S1_s_at--569--8011Chr06:10373253..10373277 (25 bp)
GGAGGAAGCAGGTCGTCCCTTGCCC
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--707--1351Chr06:10373259..10373283 (25 bp)
AGCAGGTCGTCCCTTGCCCAAGTTT
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--877--2971Chr06:10373288..10373312 (25 bp)
AATGGGATGTCAACGACCCAGCGTC
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--676--4351Chr06:10373305..10373329 (25 bp)
CCAGCGTCCGCTGATGGATTCACAG
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--12--10511Chr06:10373323..10373347 (25 bp)
TTCACAGTGATATTCAACAAAGCCA
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--440--231Chr06:10373332..10373356 (25 bp)
ATATTCAACAAAGCCAGAGATGAGA
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--281--7611Chr06:10373371..10373395 (25 bp)
GGGCAAGATACTGATTCACCCTGCA
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--74--6491Chr06:10373377..10373401 (25 bp)
GATACTGATTCACCCTGCAAAGAAA
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--69--6571Chr06:10373383..10373407 (25 bp)
GATTCACCCTGCAAAGAAACTAGGA
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--567--2331Chr06:10373399..10373423 (25 bp)
AAACTAGGACTGAGAGGGTGGAATC
LOC_Os06g17870
OsAffx.27689.1.S1_s_at--13--7731Chr06:10373414..10373438 (25 bp)
GGGTGGAATCATATGCCCCCAAGAC
LOC_Os06g17870
Target Sequence 
GGAGGAAGCAGGTCGTCCCTTGCCCAAGTTTGGTGAATGGGATGTCAACGACCCAGCGTCCGCTGATGGATTCACAGTGA
TATTCAACAAAGCCAGAGATGAGAAAAAGGGTGGGAATGGGCAAGATACTGATTCACCCTGCAAAGAAACTAGGACTGAG
AGGGTGGAATCATATGCCCCCAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27689.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis