Browse Element(s) Details


OsAffx.15478.3.S1_at

Description tigr:9634.m01777
TID=OsAffx.15478.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1791011/11NBS-LRR disease resistance protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17870OsAffx.27689.1.S1_s_at11/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17870OsAffx.27689.1.S1_at9/116+10371361..10373625nitrate-induced NOI protein, putative
LOC_Os06g17880Os.50486.1.S1_at11/116+10374847..10379262NBS-LRR disease resistance protein, putative, expressed
LOC_Os06g17890OsAffx.15477.1.S1_at8/116+10381005..10382012hypothetical protein
LOC_Os06g17900OsAffx.15478.1.S1_at2/116+10386510..10389466NB-ARC domain containing protein
LOC_Os06g17910OsAffx.15478.3.S1_at11/116+10396098..10398254NBS-LRR disease resistance protein, putative
LOC_Os06g17920OsAffx.15478.1.S1_at10/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920Os.50906.1.S1_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.8356.1.S1_x_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.24024.1.S1_at1/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17930OsAffx.15478.2.S1_at11/116+10419704..10426558NBS-LRR disease resistance protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15478.3.S1_at--739--6871Chr06:10397692..10397716 (25 bp)
GTATTAAGGAGACACCCAACTGGTT
LOC_Os06g17910
OsAffx.15478.3.S1_at--33--7631Chr06:10397791..10397815 (25 bp)
GGGAACTACATAATCTCATGGATCT
LOC_Os06g17910
OsAffx.15478.3.S1_at--22--7971Chr06:10397810..10397834 (25 bp)
GGATCTTCACTTTCGTTGGTATGCA
LOC_Os06g17910
OsAffx.15478.3.S1_at--554--1111Chr06:10397852..10397876 (25 bp)
AGTGTTCATTGAGGGAGCATTCCAA
LOC_Os06g17910
OsAffx.15478.3.S1_at--986--5071Chr06:10397938..10397962 (25 bp)
GCACCTCACCCCAGATGGAATGGAT
LOC_Os06g17910
OsAffx.15478.3.S1_at--573--6491Chr06:10397960..10397984 (25 bp)
GATAGAAATCTGTCATTGCGAACTG
LOC_Os06g17910
OsAffx.15478.3.S1_at--947--10151Chr06:10397986..10398010 (25 bp)
TATCAGGGATTGTTGGTGTCAAGCA
LOC_Os06g17910
OsAffx.15478.3.S1_at--524--8991Chr06:10398077..10398101 (25 bp)
TGAAGTGGACACACACCCCAATCGG
LOC_Os06g17910
OsAffx.15478.3.S1_at--709--3571Chr06:10398104..10398128 (25 bp)
CATATTGCGCCTGTCTGAGAAGCGA
LOC_Os06g17910
OsAffx.15478.3.S1_at--977--1431Chr06:10398121..10398145 (25 bp)
AGAAGCGAAGCTATCACGACTTGGG
LOC_Os06g17910
OsAffx.15478.3.S1_at--299--5331Chr06:10398174..10398198 (25 bp)
GAAGTGGCGGATGAGCCCCTTCTCA
LOC_Os06g17910
Target Sequence 
GTATTAAGGAGACACCCAACTGGTTTAGGGAGCTCAAACACTTGGTGAAGATTTACTTATATAAAAGTCACCTAAATGGA
GATACCATGGAGATACTCGGGGAACTACATAATCTCATGGATCTTCACTTTCGTTGGTATGCATACGTTGGGGAGAAGCT
AGTGTTCATTGAGGGAGCATTCCAAAATCTCCGGAAGCTTGTTGTTGAAACTGAGGATAAACTAAGAGAGGTGAGGTTTG
AGGAGGGCACCTCACCCCAGATGGAATGGATAGAAATCTGTCATTGCGAACTGATATCAGGGATTGTTGGTGTCAAGCAC
CTTCCAAGGCTCAAGGAGATAGGACTCAAATCTGCTAAAGTGGCAAGGCTTGGTCAGCTGGAGGGTGAAGTGGACACACA
CCCCAATCGGCCCATATTGCGCCTGTCTGAGAAGCGAAGCTATCACGACTTGGGGGAAACCCATGTATCTGTTGTTGAGG
TGGAAGTGGCGGATGAGCCCCTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15478.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis