Browse Element(s) Details


Os.50906.1.S1_at

Description gb:AK059389.1
DB_XREF= gi:32969407
TID=Os.50906.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-H05, full insert sequence.
FL= gb:AK067966.1 gb:AK059389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1797011/11Leucine Rich Repeat family protein, expressed
LOC_Os06g179202/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17930OsAffx.15478.2.S1_at11/116+10419704..10426558NBS-LRR disease resistance protein, putative
LOC_Os06g17940OsAffx.27690.1.S1_at10/116+10431044..10433306hypothetical protein
LOC_Os06g17950Os.34061.1.S2_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S1_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S3_at10/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17960NANA6+10441638..10442048hypothetical protein
LOC_Os06g17970Os.50906.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17970Os.52342.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17980OsAffx.27691.1.S1_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17980OsAffx.27691.1.S1_x_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17990OsAffx.15480.1.S1_at11/116+10461587..10461963hypothetical protein
LOC_Os06g18000Os.11183.1.S1_at10/116+10468305..10470226Protein kinase domain containing protein, expressed
LOC_Os06g18000Os.11183.1.S1_s_at10/116+10468305..10470226Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50906.1.S1_at--1023--2351Chr06:10449520..10449544 (25 bp)
AAACCCTGCATAAGGTGGCTTCCAC
LOC_Os06g17970
Os.50906.1.S1_at--447--6512Chr06:10449571..10449595 (25 bp)
GATTCTTCCCTCTCGGGTATGAATG
LOC_Os06g17970
Os.50906.1.S1_at--647--7891Chr06:10449595..10449619 (25 bp)
GGTTCAATCTGATCTTTTCTCGCGA
LOC_Os06g17970
Os.50906.1.S1_at--417--10591Chr06:10449611..10449635 (25 bp)
TTCTCGCGATATGCTACTGGTTCCA
LOC_Os06g17970
Os.50906.1.S1_at--70--10391Chr06:10449686..10449710 (25 bp)
TTATTTCCACTTCTTACCTGGGCAG
LOC_Os06g17970
Os.50906.1.S1_at--441--7591Chr06:10449705..10449729 (25 bp)
GGGCAGTCTACTTTTCCAATTCATC
LOC_Os06g17970
Os.50906.1.S1_at--960--7611Chr06:10449763..10449787 (25 bp)
GGGAACAGCATTTCAGGCACGATTG
LOC_Os06g17970
Os.50906.1.S1_at--457--8252Chr06:10449778..10449802 (25 bp)
GGCACGATTGTGGTTTTGTTATTTC
LOC_Os06g17970
Os.50906.1.S1_at--832--252Chr06:10449894..10449918 (25 bp)
ATATCGTTGCTGACCTATCACATAG
LOC_Os06g17970
Os.50906.1.S1_at--247--10711Chr06:10449935..10449959 (25 bp)
TTGCTATCTTTATTGTTACCTGCTG
LOC_Os06g17970
Os.50906.1.S1_at--1113--6511Chr06:10450035..10450059 (25 bp)
GATTTGATGGTCACTGGCTAGTACA
LOC_Os06g17970
Target Sequence 
AAACCCTGCATAAGGTGGCTTCCACTTTCTTCCATCGCGTCTCACTCTCTCGATTCTTCCCTCTCGGGTATGAATGGTTC
AATCTGATCTTTTCTCGCGATATGCTACTGGTTCCAGCATGAGCATTTGAACCAGCAGCTTAGAATTTTTCATTTGATCA
GGTGTTTTATTTCCACTTCTTACCTGGGCAGTCTACTTTTCCAATTCATCCAGAACAGAAACCATGTTTATTACACTATA
GAGGGGAACAGCATTTCAGGCACGATTGTGGTTTTGTTATTTCCATTTTGGTGTGCACACGAGGTGTTTGCTATAATGTC
TGAAAGAGCTTGTGTATACATGGTTGGTTCAACATTATGTGTTAGTCATATTTTATATCGTTGCTGACCTATCACATAGT
GCAGGAGTAAAATTTTTGCTATCTTTATTGTTACCTGCTGTTTATTTTCCTTTTCGTAAAGAATATTAGCTTTTTGGATA
ACGAAAAGAATATTATGTATCCTGCAAAAAGGTTTGATTTGATGGTCACTGGCTAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis