Browse Element(s) Details


Os.34061.1.S1_at

Description gb:AK072967.1
DB_XREF= gi:32982990
TID=Os.34061.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.34061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146M23, full insert sequence.
FL= gb:AK071029.1 gb:AK072967.1 gb:AK070885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1795011/11disease resistance RPP13-like protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17920OsAffx.15478.1.S1_at10/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920Os.50906.1.S1_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.8356.1.S1_x_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.24024.1.S1_at1/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17930OsAffx.15478.2.S1_at11/116+10419704..10426558NBS-LRR disease resistance protein, putative
LOC_Os06g17940OsAffx.27690.1.S1_at10/116+10431044..10433306hypothetical protein
LOC_Os06g17950Os.34061.1.S2_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S1_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S3_at10/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17960NANA6+10441638..10442048hypothetical protein
LOC_Os06g17970Os.50906.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17970Os.52342.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17980OsAffx.27691.1.S1_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17980OsAffx.27691.1.S1_x_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17990OsAffx.15480.1.S1_at11/116+10461587..10461963hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34061.1.S1_at--427--1111Chr06:10434850..10434874 (25 bp)
AGTGTAGGAGTTGCGGCACATCACC
LOC_Os06g17950
Os.34061.1.S1_at--799--451Chr06:10434915..10434939 (25 bp)
ATCTCGCAGCCATCCAAAGTGAGTC
LOC_Os06g17950
Os.34061.1.S1_at--356--571Chr06:10434926..10434950 (25 bp)
ATCCAAAGTGAGTCCTTCTTCGCCG
LOC_Os06g17950
Os.34061.1.S1_at--455--9331Chr06:10434945..10434969 (25 bp)
TCGCCGTCTCCGATCTGGAACTTCA
LOC_Os06g17950
Os.34061.1.S1_at--269--9531Chr06:10435002..10435026 (25 bp)
TCTCTTGGCAACTGTCGGCGGCAGC
LOC_Os06g17950
Os.34061.1.S1_at--467--4131Chr06:10435056..10435080 (25 bp)
CGCTATCGCGAGTCAACGGGATGCT
LOC_Os06g17950
Os.34061.1.S1_at--1124--1911Chr06:10435071..10435095 (25 bp)
ACGGGATGCTCGATTCGTTACATTT
LOC_Os06g17950
Os.34061.1.S1_at--990--10252Chr07:5767541..5767811 (25 bp)
TTTGTTGGAGCAAGCTAACTGCATT
NONE
Os.34061.1.S1_at--868--2551Chr06:10435135..10435159 (25 bp)
AACTGCATTGATCGCTCACGTGGTA
LOC_Os06g17950
Os.34061.1.S1_at--973--9671Chr06:10435150..10435174 (25 bp)
TCACGTGGTACTGCTTCGATCTTCA
LOC_Os06g17950
Os.34061.1.S1_at--286--9391Chr06:10435165..10435189 (25 bp)
TCGATCTTCACAATCACCCGATAAA
LOC_Os06g17950
Target Sequence 
AGTGTAGGAGTTGCGGCACATCACCGCCGCCGCTCCTACACCGTCCGCCATAGCGATTCCCTTCCATCTCGCAGCCATCC
AAAGTGAGTCCTTCTTCGCCGTCTCCGATCTGGAACTTCACCGCCGCCGCCGCCGCCGCATCTCCTCCTTCCTCTCTTGG
CAACTGTCGGCGGCAGCCAACGGCTCTCTTCCCCCCTTGTTCCTCCCGCTATCGCGAGTCAACGGGATGCTCGATTCGTT
ACATTTTTTTTAAGTACTAGTATTGCTAATTTGTTGGAGCAAGCTAACTGCATTGATCGCTCACGTGGTACTGCTTCGAT
CTTCACAATCACCCGATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis