Browse Element(s) Details


Os.52342.1.S1_at

Description gb:AK066538.1
DB_XREF= gi:32976556
TID=Os.52342.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069N08, full insert sequence.
FL= gb:AK066538.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1797011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17930OsAffx.15478.2.S1_at11/116+10419704..10426558NBS-LRR disease resistance protein, putative
LOC_Os06g17940OsAffx.27690.1.S1_at10/116+10431044..10433306hypothetical protein
LOC_Os06g17950Os.34061.1.S2_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S1_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S3_at10/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17960NANA6+10441638..10442048hypothetical protein
LOC_Os06g17970Os.50906.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17970Os.52342.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17980OsAffx.27691.1.S1_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17980OsAffx.27691.1.S1_x_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17990OsAffx.15480.1.S1_at11/116+10461587..10461963hypothetical protein
LOC_Os06g18000Os.11183.1.S1_at10/116+10468305..10470226Protein kinase domain containing protein, expressed
LOC_Os06g18000Os.11183.1.S1_s_at10/116+10468305..10470226Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52342.1.S1_at--1115--8891Chr06:10445169..10445193 (25 bp)
TGAGCATCTGAATTGCAGCCTAATT
LOC_Os06g17970
Os.52342.1.S1_at--78--10411Chr06:10445220..10445244 (25 bp)
TTATTGGGACCACACTTATGCAGAG
LOC_Os06g17970
Os.52342.1.S1_at--720--251Chr06:10445295..10445319 (25 bp)
ATATCCTGGAGGAACGCATATGCAG
LOC_Os06g17970
Os.52342.1.S1_at--419--10211Chr06:10445335..10445359 (25 bp)
TATTATTTGCAACATCTTCGGGAGA
LOC_Os06g17970
Os.52342.1.S1_at--108--7991Chr06:10445384..10445408 (25 bp)
GGATGTACTGGAAGTCCCTCTATAT
LOC_Os06g17970
Os.52342.1.S1_at--212--5571Chr06:10445424..10445448 (25 bp)
GACACAGTTTCCTCATGGTAACCAT
LOC_Os06g17970
Os.52342.1.S1_at--93--5311Chr06:10445456..10445480 (25 bp)
GAAGGAATACAAACGACGCAGCTAT
LOC_Os06g17970
Os.52342.1.S1_at--98--4131Chr06:10445472..10445496 (25 bp)
CGCAGCTATTATGGACCTGGTGATA
LOC_Os06g17970
Os.52342.1.S1_at--785--2491Chr06:10445513..10445537 (25 bp)
AACATGGTTGCCTTCGAGAGTAAAC
LOC_Os06g17970
Os.52342.1.S1_at--307--2531Chr06:10445586..10445610 (25 bp)
AACTATTACGTTCAGTGCTGTGCAA
LOC_Os06g17970
Os.52342.1.S1_at--545--4711Chr06:10445602..10445626 (25 bp)
GCTGTGCAATTTTGCTTTTGACCAT
LOC_Os06g17970
Target Sequence 
TGAGCATCTGAATTGCAGCCTAATTAATTTTATTTGTCATTTGCATTAGATTTATTGGGACCACACTTATGCAGAGTGGT
ATGGTACTCAGTTTATTTTTAATGATTTATTTATATTTTTTATTACATATCCTGGAGGAACGCATATGCAGTTTTTTTTA
TAAGTATATTATTTGCAACATCTTCGGGAGATACATGTAGAGGAAAGTGAAAGTAGGATGTACTGGAAGTCCCTCTATAT
GCCCAAACACAAGTGGACACAGTTTCCTCATGGTAACCATGTTCAATGAAGGAATACAAACGACGCAGCTATTATGGACC
TGGTGATAATCTAATTTAGACAGAAACATGGTTGCCTTCGAGAGTAAACAATGTAGCATGGCATGCTTAAGTCAAATGCA
TGTACAATTTGACATGGAACTATTACGTTCAGTGCTGTGCAATTTTGCTTTTGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis