Browse Element(s) Details


OsAffx.27691.1.S1_x_at

Description tigr:9630.m00351
TID=OsAffx.27691.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0439011/11hypothetical protein
LOC_Os06g1798010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04330Os.22467.1.S1_at11/112+1909008..19128085'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os02g04340OsAffx.26812.1.S1_at11/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04340OsAffx.26812.2.S1_x_at6/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04350Os.23706.1.A1_x_at1/112+1917163..1919044retrotransposon protein, putative, unclassified
LOC_Os02g04360OsAffx.26942.1.S1_x_at11/112+1921049..1921726hypothetical protein
LOC_Os02g04360OsAffx.26942.1.S1_at10/112+1921049..1921726hypothetical protein
LOC_Os02g04370NANA2+1928681..1929055hypothetical protein
LOC_Os02g04380NANA2+1930708..1933214hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_x_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04400NANA2+1942710..1942973hypothetical protein
LOC_Os02g04410OsAffx.2503.1.S1_at11/112+1944550..1945719hypothetical protein
LOC_Os02g04420Os.11694.1.S1_x_at11/112+1946073..1949419expressed protein
LOC_Os02g04420Os.11694.2.S1_at11/112+1946073..1949419expressed protein
LOC_Os02g04430Os.49798.1.S1_at11/112+1949825..1953397Leucine Rich Repeat family protein, expressed
LOC_Os02g04440OsAffx.24097.1.S1_x_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440OsAffx.24097.1.S1_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440Os.14475.1.S1_at10/112+1955439..1965510transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27691.1.S1_x_at--918--7092Chr11:374430..374643 (25 bp)
GTCACCCTCTCTATGCAGTACGTTC
NONE
OsAffx.27691.1.S1_x_at--287--3773Chr11:374436..374649 (25 bp)
CTCTCTATGCAGTACGTTCTGCTTG
NONE
OsAffx.27691.1.S1_x_at--173--10133Chr11:374631..374654 (24 bp)
TATGCAGTACGTTCTGCTTGGTTTC
NONE
OsAffx.27691.1.S1_x_at--487--5013Chr11:374633..374657 (25 bp)
GCAGTACGTTCTGCTTGGTTTCAGC
NONE
OsAffx.27691.1.S1_x_at--154--1193Chr11:374635..374659 (25 bp)
AGTACGTTCTGCTTGGTTTCAGCCG
NONE
OsAffx.27691.1.S1_x_at--885--9933Chr11:374637..374661 (25 bp)
TACGTTCTGCTTGGTTTCAGCCGAG
NONE
OsAffx.27691.1.S1_x_at--671--3233Chr11:374665..374689 (25 bp)
CAAGAACAACAGTGGCGGCAGCAGC
NONE
OsAffx.27691.1.S1_x_at--96--2493Chr11:374672..374696 (25 bp)
AACAGTGGCGGCAGCAGCAAGCCCG
NONE
OsAffx.27691.1.S1_x_at--44--3933Chr11:374793..374817 (25 bp)
CGGCGCACGGGAGGCATGAACGGCA
NONE
OsAffx.27691.1.S1_x_at--1098--4973Chr11:374806..374830 (25 bp)
GCATGAACGGCAGCGGCGCGTGGGA
NONE
OsAffx.27691.1.S1_x_at--808--1093Chr11:374837..374861 (25 bp)
AGTGGCGAGCGAGTCCGGTCGCGAT
NONE
Target Sequence 
GTCACCCTCTCTATGCAGTACGTTCTGCTTGGTTTCAGCCGAGNGGCAAGAACAACAGTGGCGGCAGCAGCAAGCCCGAC
GTCCGGCTCCCTGTGCGCCATGCTGCCNGACTCTTGCTNGCCCCACAGGCCACAGCTCGGGGTGGNNNGTTGCCGCCAAA
TTGGGGTGCGGCGGCGGCGCACGGGAGGCATGAACGGCAGCGGCGCGTGGGAGGAGNNNACAGTGGCGAGCGAGTCCGGT
CGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27691.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis