Browse Element(s) Details


Os.22467.1.S1_at

Description gb:AK103955.1
DB_XREF= gi:32989164
TID=Os.22467.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-H08, full insert sequence.
FL= gb:AK072017.1 gb:AK103955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0433011/115'-AMP-activated protein kinase beta-1 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04270Os.24718.1.S1_at10/112+1882715..1888951DNA polymerase V family protein, expressed
LOC_Os02g04280Os.47130.4.A1_x_at3/112+1889869..1890192retrotransposon protein, putative, unclassified
LOC_Os02g04290NANA2+1891132..1894155retrotransposon protein, putative, unclassified
LOC_Os02g04300NANA2+1894992..1897289retrotransposon protein, putative, unclassified
LOC_Os02g04310NANA2+1898854..1900969retrotransposon protein, putative, unclassified
LOC_Os02g04320Os.8830.1.S1_at11/112+1902990..1905136SEC13-related protein, putative, expressed
LOC_Os02g04330Os.22467.1.S1_at11/112+1909008..19128085'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os02g04340OsAffx.26812.1.S1_at11/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04340OsAffx.26812.2.S1_x_at6/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04350Os.23706.1.A1_x_at1/112+1917163..1919044retrotransposon protein, putative, unclassified
LOC_Os02g04360OsAffx.26942.1.S1_x_at11/112+1921049..1921726hypothetical protein
LOC_Os02g04360OsAffx.26942.1.S1_at10/112+1921049..1921726hypothetical protein
LOC_Os02g04370NANA2+1928681..1929055hypothetical protein
LOC_Os02g04380NANA2+1930708..1933214hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_x_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_at11/112+1937125..1937611hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22467.1.S1_at--653--2771Chr02:1911574..1911598 (25 bp)
AAGAGTGAACTTGCCGTTATGGAAC
LOC_Os02g04330
Os.22467.1.S1_at--60--10111Chr02:1911591..1911820 (25 bp)
TATGGAACTTGAACTGCAGGCTCTG
LOC_Os02g04330
Os.22467.1.S1_at--446--5011Chr02:1911966..1911989 (24 bp)
GCAGGCTCTGGTTGCCCTAGCTGAA
LOC_Os02g04330
Os.22467.1.S1_at--648--10771Chr02:1912003..1912027 (25 bp)
TTGATGTTCCATCTGGGTCTAGGAA
LOC_Os02g04330
Os.22467.1.S1_at--811--3111Chr02:1912039..1912063 (25 bp)
AATATATCCAGTCACATCTTCTCAC
LOC_Os02g04330
Os.22467.1.S1_at--421--7991Chr02:1912177..1912201 (25 bp)
GGATGTAGACTCTTTAAAGCACCAA
LOC_Os02g04330
Os.22467.1.S1_at--102--3891Chr02:1912209..1912233 (25 bp)
CTGTCTTCTGGGTTGGCATTGCTGA
LOC_Os02g04330
Os.22467.1.S1_at--486--2991Chr02:1912349..1912373 (25 bp)
AATGTACAAATTATGGGCTCCTTCG
LOC_Os02g04330
Os.22467.1.S1_at--926--7791Chr02:1912380..1912404 (25 bp)
GGTCCCAGGGAGAGGCAATGTCCAT
LOC_Os02g04330
Os.22467.1.S1_at--782--8311Chr02:1912590..1912614 (25 bp)
GGCTGTCACTGGAGTACCCAATTGA
LOC_Os02g04330
Os.22467.1.S1_at--159--1251Chr02:1912721..1912745 (25 bp)
AGATTGAACTGTACTCGATTGCTAT
LOC_Os02g04330
Target Sequence 
AAGAGTGAACTTGCCGTTATGGAACTTGAACTGCAGGCTCTGGTTGCCCTAGCTGAAGAGATTGCTAATTTTGATGTTCC
ATCTGGGTCTAGGAAGATAAATGGAAAATATATCCAGTCACATCTTCTCACCAGATTAGAAGCTGTTCATGATAAGGTTA
TGGAACAAATTAAGGATGTAGACTCTTTAAAGCACCAAGAAATTTCTGTCTTCTGGGTTGGCATTGCTGAGAATGTACAA
ATTATGGGCTCCTTCGATGGCTGGTCCCAGGGAGAGGCAATGTCCATGGAGTATTCAGGTTACCAAGCAAGATTCTNTGC
AACTNTGAATNTTAGACCTGGGAGGTATGAGATCAAATTCTTGGTTGATGGAGAGTGGAGGCTGTCACTGGAGTACCCAA
TTGATGGCGAAGGTTCAATGCAGAACAATATACTTGTTGTAAATTAATGTAGATATCTGTTGGCTCCTAGTTTGCCATAG
TTGTAACTTGCAGCTATAAAACCTAGCGCAAGATTGAACTGTACTCGATTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis