Browse Element(s) Details


Os.24718.1.S1_at

Description gb:AK100570.1
DB_XREF= gi:32985779
TID=Os.24718.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105B17, full insert sequence.
FL= gb:AK100570.1 gb:AK059533.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0427010/11DNA polymerase V family protein, expressed
LOC_Os08g316801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04240OsAffx.24094.1.S1_at11/112+1860049..1864473Wee1, putative, expressed
LOC_Os02g04250Os.5398.2.S1_x_at11/112+1872678..1874820glycosyltransferase, putative, expressed
LOC_Os02g04260Os.8321.1.S1_at11/112+1879002..1882475expressed protein
LOC_Os02g04270Os.24718.1.S1_at10/112+1882715..1888951DNA polymerase V family protein, expressed
LOC_Os02g04280Os.47130.4.A1_x_at3/112+1889869..1890192retrotransposon protein, putative, unclassified
LOC_Os02g04290NANA2+1891132..1894155retrotransposon protein, putative, unclassified
LOC_Os02g04300NANA2+1894992..1897289retrotransposon protein, putative, unclassified
LOC_Os02g04310NANA2+1898854..1900969retrotransposon protein, putative, unclassified
LOC_Os02g04320Os.8830.1.S1_at11/112+1902990..1905136SEC13-related protein, putative, expressed
LOC_Os02g04330Os.22467.1.S1_at11/112+1909008..19128085'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os02g04340OsAffx.26812.1.S1_at11/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04340OsAffx.26812.2.S1_x_at6/112+1913425..1916183PB1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24718.1.S1_at--800--8071Chr02:1888367..1888391 (25 bp)
GGAGCTCTTTGGATTTGTTCTGCAG
LOC_Os02g04270
Os.24718.1.S1_at--1150--5711Chr02:1888446..1888470 (25 bp)
GACTGCATACTCAAATCTTGGGCTG
LOC_Os02g04270
Os.24718.1.S1_at--863--6653Chr02:1888496..1888520 (25 bp)
GTTGAAGAAGCACCTTTCTCAGTTG
LOC_Os02g04270
Os.24718.1.S1_at--147--6371Chr02:1888550..1888574 (25 bp)
GATCCCAGAAAACAAGTCACGTCGT
LOC_Os02g04270
Os.24718.1.S1_at--867--2851Chr02:1888579..1888603 (25 bp)
AAGTCCGGAGATTTTGCACCCGAGT
LOC_Os02g04270
Os.24718.1.S1_at--734--2231Chr02:1888650..1888674 (25 bp)
AAATTGAATCCTGAAACGCTCTCCC
LOC_Os02g04270
Os.24718.1.S1_at--625--10091Chr02:1888690..1888714 (25 bp)
TAGGAGCTGCTTTTGTTCGCTTTCA
LOC_Os02g04270
Os.24718.1.S1_at--39--5991Chr02:1888737..1888761 (25 bp)
GAGACTGTATTTGTTCCCTTTCGAA
LOC_Os02g04270
Os.24718.1.S1_at--682--2831Chr02:1888796..1888820 (25 bp)
AAGTTTTGTTCCTCATTTCAGCTAC
LOC_Os02g04270
Os.24718.1.S1_at--103--9751Chr02:1888907..1888931 (25 bp)
TAATTGGTATAGACGCGCGCAGCAC
LOC_Os02g04270
Os.24718.1.S1_at--371--5112Chr02:1888928..1888952 (25 bp)
GCACAGCTGCCATGCAATTTGCTCA
NONE
Target Sequence 
GGAGCTCTTTGGATTTGTTCTGCAGAAGATTGGATGCACAAAAGCTGAATATCGAAGAGTTCAAACGCTAGAATTGGTAG
ACTGCATACTCAAATCTTGGGCTGGTGATGATTCGAGTGCATCGAAGGTGTTGAAGAAGCACCTTTCTCAGTTGTGCGAG
CTGATACAAGAAGTTCTTACAAAGATCCCAGAAAACAAGTCACGTCGTCAAGAAGTCCGGAGATTTTGCACCCGAGTATT
GCAGACAGTGACAAAGCTTAACCTCAAAGACCGGTTTCAGAAGAAATTGAATCCTGAAACGCTCTCCCTTTGTGAGGCAC
AGCTAGGAGCTGCTTTTGTTCGCTTTCAAAAATGACATTACATTTATGAGGAGACTGTATTTGTTCCCTTTCGAAAATGA
TAGTCACTAGAAATATTTTGAGCTGAGCTAAGTTTTGTTCCTCATTTCAGCTACATGAGTAGATTCTATCAAATTAAGCT
GTATCGGTTTTTGTGACAGTATCTGAAAGGAAAAGATATTCACTGTTATGTTAGCAATACTAATTGGTATAGACGCGCGC
AGCACAGCTGCCATGCAATTTGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis