Browse Element(s) Details


OsAffx.24094.1.S1_at

Description tigr:9630.m00332
TID=OsAffx.24094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AJ439593 protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0424011/11Wee1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04190OsAffx.24092.1.S1_at11/112+1837868..1839002expressed protein
LOC_Os02g04200Os.35344.18.S1_x_at11/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200Os.35344.3.S1_x_at9/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200OsAffx.22940.5.S1_x_at3/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04210Os.52879.1.S1_at11/112+1848217..1848878expressed protein
LOC_Os02g04220NANA2+1849862..1850173hypothetical protein
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04240OsAffx.24094.1.S1_at11/112+1860049..1864473Wee1, putative, expressed
LOC_Os02g04250Os.5398.2.S1_x_at11/112+1872678..1874820glycosyltransferase, putative, expressed
LOC_Os02g04260Os.8321.1.S1_at11/112+1879002..1882475expressed protein
LOC_Os02g04270Os.24718.1.S1_at10/112+1882715..1888951DNA polymerase V family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004611molecular_functionphosphoenolpyruvate carboxykinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24094.1.S1_at--985--3371Chr02:1862790..1862893 (25 bp)
CAGCCTTAGGGTGCCATGAGAACAT
LOC_Os02g04240
OsAffx.24094.1.S1_at--1092--2291Chr02:1862718..1862742 (25 bp)
AAATGGAACTGTGTGACCGCTGCCT
LOC_Os02g04240
OsAffx.24094.1.S1_at--676--8931Chr02:1862705..1862729 (25 bp)
TGACCGCTGCCTGTCCATGGATAGA
LOC_Os02g04240
OsAffx.24094.1.S1_at--1065--7611Chr02:1862661..1862685 (25 bp)
GGGAAGCCCTGGAACTGCTGTACCA
LOC_Os02g04240
OsAffx.24094.1.S1_at--529--2311Chr02:1861859..1861883 (25 bp)
AAAGGCTTGGACTTCATTCATGAAC
LOC_Os02g04240
OsAffx.24094.1.S1_at--384--631Chr02:1861840..1861864 (25 bp)
ATGAACGTGGTATTGCACACCTTGA
LOC_Os02g04240
OsAffx.24094.1.S1_at--779--6631Chr02:1861759..1861783 (25 bp)
GTTGTGCTACACTTATTGATCGGAG
LOC_Os02g04240
OsAffx.24094.1.S1_at--986--6551Chr02:1861715..1861739 (25 bp)
GATTCACGTTATATGCCTCCAGAGA
LOC_Os02g04240
OsAffx.24094.1.S1_at--384--351Chr02:1861619..1861643 (25 bp)
ATAAGAGGTACCCAGCTTCCTGATT
LOC_Os02g04240
OsAffx.24094.1.S1_at--483--9651Chr02:1861587..1861611 (25 bp)
TCAGTTCACAAGTCTCCGGGAGGGA
LOC_Os02g04240
OsAffx.24094.1.S1_at--251--2451Chr02:1861562..1861586 (25 bp)
AAAATTGCGTTGCTTCCAGGATGCC
LOC_Os02g04240
Target Sequence 
CAGCCTTAGGGTGCCATGAGAACATTGTTGGATATTTCACTTCTTGGTTTGAGAACAAACAGCTTTTTATTCAAATGGAA
CTGTGTGACCGCTGCCTGTCCATGGATAGAAATCAGCCGCTGAAATGTGGGGAAGCCCTGGAACTGCTGTACCAGATCTG
CAAAGGCTTGGACTTCATTCATGAACGTGGTATTGCACACCTTGATGTGAAGCCAGATAACATATATGTCAGAAATGGTG
TTTATAAGCTTGGTGATTTTGGTTGTGCTACACTTATTGATCGGAGTTTGGCAATTGAAGATGGAGATTCACGTTATATG
CCTCCAGAGATGCTGAACGACAAGTATGAGCATCTTGACAAGGTGGATATCTTTTCTCTTGGGGCAGCTATCTATGAACT
TATAAGAGGTACCCAGCTTCCTGATTCTGGACCTCAGTTCACAAGTCTCCGGGAGGGAAAAATTGCGTTGCTTCCAGGAT
GCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis