Browse Element(s) Details


Os.52879.1.S1_at

Description gb:AK069693.1
DB_XREF= gi:32979717
TID=Os.52879.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028F11, full insert sequence.
FL= gb:AK069693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0421011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04170Os.26922.1.S1_at11/112+1821867..1826372L-aspartate oxidase family protein, expressed
LOC_Os02g04180Os.55811.1.S1_at11/112+1826720..1829317transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g04190OsAffx.24092.1.S1_at11/112+1837868..1839002expressed protein
LOC_Os02g04200Os.35344.18.S1_x_at11/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200Os.35344.3.S1_x_at9/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200OsAffx.22940.5.S1_x_at3/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04210Os.52879.1.S1_at11/112+1848217..1848878expressed protein
LOC_Os02g04220NANA2+1849862..1850173hypothetical protein
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04240OsAffx.24094.1.S1_at11/112+1860049..1864473Wee1, putative, expressed
LOC_Os02g04250Os.5398.2.S1_x_at11/112+1872678..1874820glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52879.1.S1_at--550--6851Chr02:1848280..1848304 (25 bp)
GTTTCCATGGCTTCTTCTCGGGTTG
LOC_Os02g04210
Os.52879.1.S1_at--146--10571Chr02:1848291..1848315 (25 bp)
TTCTTCTCGGGTTGTCGTCGCGGTG
LOC_Os02g04210
Os.52879.1.S1_at--260--4251Chr02:1848401..1848425 (25 bp)
CCGTCGTCGGCAAGATGTCGAGCTA
LOC_Os02g04210
Os.52879.1.S1_at--599--771Chr02:1848415..1848439 (25 bp)
ATGTCGAGCTACCAGCCGCCGGTGA
LOC_Os02g04210
Os.52879.1.S1_at--1043--7551Chr02:1848466..1848490 (25 bp)
GGGCCGTCGCACAGGCACAACAAGA
LOC_Os02g04210
Os.52879.1.S1_at--1070--931Chr02:1848505..1848529 (25 bp)
AGGAAGAGGAAGCACTTCCCGCCGT
LOC_Os02g04210
Os.52879.1.S1_at--1036--9391Chr02:1848538..1848562 (25 bp)
TCGTACCACGATCCGCACAGCTGAG
LOC_Os02g04210
Os.52879.1.S1_at--45--471Chr02:1848612..1848636 (25 bp)
ATCTCTCTCTGCAGTAGCTTCATTA
LOC_Os02g04210
Os.52879.1.S1_at--1038--4891Chr02:1848693..1848717 (25 bp)
GCTTAATTGTTATTTCCTTCTTTTG
LOC_Os02g04210
Os.52879.1.S1_at--1086--3512Chr02:1848793..1848817 (25 bp)
CATGCATGCCATTTAGTTTAATTTT
LOC_Os02g04210
Os.52879.1.S1_at--167--1311Chr02:1848819..1848843 (25 bp)
AGATGTTTCTCTACGAATTATTCAT
LOC_Os02g04210
Target Sequence 
GTTTCCATGGCTTCTTCTCGGGTTGTCGTCGCGGTGGCGCTGCTCGTGGCGGCGGTGCTCGCCGCGTTCGGTGCGCTGGC
GCCGGCGTGCGAGGGCGCGAGGGTGATGCGCGAGGGCGCCGCCGTCGTCGGCAAGATGTCGAGCTACCAGCCGCCGGTGA
GGCATAAGCCTCCCGTCCCGCCGTCGGGGCCGTCGCACAGGCACAACAAGAGGGCGACAGTCCCGAGGAAGAGGAAGCAC
TTCCCGCCGTCGGGCCCGTCGTACCACGATCCGCACAGCTGAGCTCCGGCGATCGTCGTGCGCGGCCATGGAAAGACGGC
CGGCCAGTCAGCATCTCTCTCTGCAGTAGCTTCATTAATTAATTGATTTAATTAGTTAGGAATTATAATAATAATAGCAG
GAGAGATTATCTAGCTTAATTGTTATTTCCTTCTTTTGATTAGTTTGGTAGGTTAATTTGAGGTGTAATGCAGGTATTGT
TAATTAGCATTTCGTATAGAAATGCGCATGATACATGCATGCCATTTAGTTTAATTTTTAGATGTTTCTCTACGAATTAT
TCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis