Browse Element(s) Details


Os.26922.1.S1_at

Description gb:AK072394.1
DB_XREF= gi:32982417
TID=Os.26922.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079P07, full insert sequence.
FL= gb:AK072394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0417011/11L-aspartate oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04120NANA2+1793713..1796926Cytidylyltransferase family protein, expressed
LOC_Os02g04130Os.27915.1.S1_at11/112+1799750..1800811expressed protein
LOC_Os02g04130OsAffx.25637.1.S1_at1/112+1799750..1800811expressed protein
LOC_Os02g04140NANA2+1803724..1807030retrotransposon protein, putative, unclassified
LOC_Os02g04150NANA2+1807655..1813810retrotransposon protein, putative, unclassified
LOC_Os02g04160Os.12228.1.S1_at11/112+1816334..1819090expressed protein
LOC_Os02g04170Os.26922.1.S1_at11/112+1821867..1826372L-aspartate oxidase family protein, expressed
LOC_Os02g04180Os.55811.1.S1_at11/112+1826720..1829317transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g04190OsAffx.24092.1.S1_at11/112+1837868..1839002expressed protein
LOC_Os02g04200Os.35344.18.S1_x_at11/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200Os.35344.3.S1_x_at9/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200OsAffx.22940.5.S1_x_at3/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04210Os.52879.1.S1_at11/112+1848217..1848878expressed protein
LOC_Os02g04220NANA2+1849862..1850173hypothetical protein
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006121biological_processmitochondrial electron transport, succinate to ubiquinone
GO:0009435biological_processNAD biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005749cellular_componentrespiratory chain complex II (sensu Eukaryota)
GO:0000104molecular_functionsuccinate dehydrogenase activity
GO:0008734molecular_functionL-aspartate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26922.1.S1_at--550--2291Chr02:1825805..1825829 (25 bp)
AAATGAGGAACCTCTTCTGCTGCGC
LOC_Os02g04170
Os.26922.1.S1_at--1121--10591Chr02:1825819..1825843 (25 bp)
TTCTGCTGCGCAAAGCTGGTTGTGA
LOC_Os02g04170
Os.26922.1.S1_at--752--10731Chr02:1825853..1825877 (25 bp)
TTGCAAGGCACGAGAGCCGAGGCTT
LOC_Os02g04170
Os.26922.1.S1_at--310--6211Chr02:1825871..1825895 (25 bp)
GAGGCTTGCACTTCACCGAAGACTT
LOC_Os02g04170
Os.26922.1.S1_at--828--10631Chr02:1825894..1825918 (25 bp)
TTCCCTTACCTGGAGGAGAGCAAGA
LOC_Os02g04170
Os.26922.1.S1_at--842--5411Chr02:1825920..1825944 (25 bp)
GAAGCCTACAGTGATCTTCCCTACT
LOC_Os02g04170
Os.26922.1.S1_at--652--10651Chr02:1825936..1825960 (25 bp)
TTCCCTACTCATATCCAGGAGCTGA
LOC_Os02g04170
Os.26922.1.S1_at--680--4751Chr02:1826072..1826096 (25 bp)
GCTGAACCAGCCTGCTATTTGACAA
LOC_Os02g04170
Os.26922.1.S1_at--518--8911Chr02:1826124..1826148 (25 bp)
TGAGAAGTTCATTGGCTACAAGCCT
LOC_Os02g04170
Os.26922.1.S1_at--324--2211Chr02:1826178..1826202 (25 bp)
ACAACTGTTTGTTCTACCGTTCTCA
LOC_Os02g04170
Os.26922.1.S1_at--139--1791Chr02:1826193..1826217 (25 bp)
ACCGTTCTCATATGATTCAGCTGTT
LOC_Os02g04170
Target Sequence 
AAATGAGGAACCTCTTCTGCTGCGCAAAGCTGGTTGTGAAAAGTGCTCTTGCAAGGCACGAGAGCCGAGGCTTGCACTTC
ACCGAAGACTTCCCTTACCTGGAGGAGAGCAAGAGGAAGCCTACAGTGATCTTCCCTACTCATATCCAGGAGCTGACATG
GAGCTCAAAGCCATTGCAGAAGCAGCTGCAGTGCAAGTAGATGGCACACCCATACAAATTACAAAGGGAGTTTGGGATTG
CAGATTCCATTAATTTATTAAAATTAGGCTGAACCAGCCTGCTATTTGACAATAAACACATGAATTCAACCTGGAATTGT
GAGAAGTTCATTGGCTACAAGCCTACAATTAGGCTTGAAGTAGCATGTATTTAACAACTGTTTGTTCTACCGTTCTCATA
TGATTCAGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis