Browse Element(s) Details


Os.27915.1.S1_at

Description gb:AK108331.1
DB_XREF= gi:32993540
TID=Os.27915.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-A01, full insert sequence.
FL= gb:AK108331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0413011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04080NANA2+1773173..1779320SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04090OsAffx.15996.1.S1_x_at4/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04090OsAffx.27850.1.A1_at1/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04100Os.12193.1.S1_at11/112+1784573..1788080Proteasome subunit alpha type 1, putative, expressed
LOC_Os02g04110Os.54956.1.S1_at11/112+1788746..1792353expressed protein
LOC_Os02g04110OsAffx.24091.1.S1_at10/112+1788746..1792353expressed protein
LOC_Os02g04120NANA2+1793713..1796926Cytidylyltransferase family protein, expressed
LOC_Os02g04130Os.27915.1.S1_at11/112+1799750..1800811expressed protein
LOC_Os02g04130OsAffx.25637.1.S1_at1/112+1799750..1800811expressed protein
LOC_Os02g04140NANA2+1803724..1807030retrotransposon protein, putative, unclassified
LOC_Os02g04150NANA2+1807655..1813810retrotransposon protein, putative, unclassified
LOC_Os02g04160Os.12228.1.S1_at11/112+1816334..1819090expressed protein
LOC_Os02g04170Os.26922.1.S1_at11/112+1821867..1826372L-aspartate oxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27915.1.S1_at--902--8171Chr02:1800214..1800238 (25 bp)
GGCAAGGACAAGTTCGCCTTCCTGC
LOC_Os02g04130
Os.27915.1.S1_at--462--1511Chr02:1800117..1800141 (25 bp)
AGCAGAGCGCCGTGAAGACGAAGCC
LOC_Os02g04130
Os.27915.1.S1_at--94--2131Chr02:1800045..1800069 (25 bp)
ACAGGCTCTTCTACAGCAAGGCCAG
LOC_Os02g04130
Os.27915.1.S1_at--154--4131Chr02:1800000..1800024 (25 bp)
CGCAGCAAGCCTCGTACCTGACGTA
LOC_Os02g04130
Os.27915.1.S1_at--949--3851Chr02:1799983..1800007 (25 bp)
CTGACGTACCGACCGGCGTTCAGCG
LOC_Os02g04130
Os.27915.1.S1_at--1117--2151Chr02:1799933..1799957 (25 bp)
ACACCACACCGCCTATTAGTTTAAT
LOC_Os02g04130
Os.27915.1.S1_at--707--10051Chr02:1799917..1799941 (25 bp)
TAGTTTAATCACTTGGTCAATAACC
LOC_Os02g04130
Os.27915.1.S1_at--1021--7811Chr02:1799903..1799927 (25 bp)
GGTCAATAACCAAACCAACTGATTA
LOC_Os02g04130
Os.27915.1.S1_at--37--3111Chr02:1799829..1799853 (25 bp)
AATTTTCGGCGAAATTCGAGTCGAG
LOC_Os02g04130
Os.27915.1.S1_at--1143--9351Chr02:1799809..1799833 (25 bp)
TCGAGATTTCTCGTTTGTACTAGAA
LOC_Os02g04130
Os.27915.1.S1_at--360--6851Chr02:1799797..1799821 (25 bp)
GTTTGTACTAGAACCTTATCATGTA
LOC_Os02g04130
Target Sequence 
GGCAAGGACAAGTTCGCCTTCCTGCACCACCACGCCGCCGCGCCGCCATCATCCAAACTGAAGACTCCTCCTCCCCCTCA
ACAACCACAGCAGNAGAAGCAGAGCGCCGTGAAGACGAAGCCGGCGGCGAAGAAGGGCGTGGTCACCGAGATGGACATGG
CCACCGCGCACAGGCTCTTCTACAGCAAGGCCAGCGCCGGCGGCGACCGGCGGCCGCAGCAAGCCTCGTACCTGACGTAC
CGACCGGCGTTCAGCGGCCTCTTCGCGCTCGGCCGGTCGCAACACCACACCGCCTATTAGTTTAATCACTTGGTCAATAA
CCAAACCAACTGATTACTAGTGGTAGTTGTTGTTAAATTAATTGTTTTGTTGTAAAAGTGTTCAAAATTTTCGGCGAAAT
TCGAGTCGAGATTTCTCGTTTGTACTAGAACCTTATCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis