Browse Element(s) Details


Os.54956.1.S1_at

Description gb:AK107180.1
DB_XREF= gi:32992389
TID=Os.54956.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54956 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H02, full insert sequence.
FL= gb:AK107180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0411011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04050NANA2+1758439..1764006SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04060NANA2+1766071..1767766SMC family, C-terminal domain containing protein
LOC_Os02g04070NANA2+1768220..1772620retrotransposon protein, putative, unclassified
LOC_Os02g04080NANA2+1773173..1779320SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04090OsAffx.15996.1.S1_x_at4/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04090OsAffx.27850.1.A1_at1/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04100Os.12193.1.S1_at11/112+1784573..1788080Proteasome subunit alpha type 1, putative, expressed
LOC_Os02g04110Os.54956.1.S1_at11/112+1788746..1792353expressed protein
LOC_Os02g04110OsAffx.24091.1.S1_at10/112+1788746..1792353expressed protein
LOC_Os02g04120NANA2+1793713..1796926Cytidylyltransferase family protein, expressed
LOC_Os02g04130Os.27915.1.S1_at11/112+1799750..1800811expressed protein
LOC_Os02g04130OsAffx.25637.1.S1_at1/112+1799750..1800811expressed protein
LOC_Os02g04140NANA2+1803724..1807030retrotransposon protein, putative, unclassified
LOC_Os02g04150NANA2+1807655..1813810retrotransposon protein, putative, unclassified
LOC_Os02g04160Os.12228.1.S1_at11/112+1816334..1819090expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54956.1.S1_at--190--2911Chr02:1791934..1791958 (25 bp)
AAGGTTCACTCGGTTCTTTCAGAGA
LOC_Os02g04110
Os.54956.1.S1_at--13--3091Chr02:1792008..1792032 (25 bp)
AATACCTGCTGAATGCGTCGAGCGC
LOC_Os02g04110
Os.54956.1.S1_at--554--3311Chr02:1792035..1792059 (25 bp)
CATCGACATGCAGAAATCCCTAGGG
LOC_Os02g04110
Os.54956.1.S1_at--212--3051Chr02:1792049..1792073 (25 bp)
AATCCCTAGGGCAGAGCGTATTCGC
LOC_Os02g04110
Os.54956.1.S1_at--37--1651Chr02:1792063..1792087 (25 bp)
AGCGTATTCGCCCACAATTTTGTGT
LOC_Os02g04110
Os.54956.1.S1_at--704--10651Chr02:1792117..1792141 (25 bp)
TTCCCTCATGTCTACGCAGCAAAGA
LOC_Os02g04110
Os.54956.1.S1_at--1007--6691Chr02:1792149..1792173 (25 bp)
GTTCCTGAAGATTTGCTCCATAGCT
LOC_Os02g04110
Os.54956.1.S1_at--365--5851Chr02:1792192..1792216 (25 bp)
GACCAACAGGTATTCTTTCGAGACA
LOC_Os02g04110
Os.54956.1.S1_at--834--211Chr02:1792259..1792283 (25 bp)
ATATTTACCCATTAGAGTTCCTGAA
LOC_Os02g04110
Os.54956.1.S1_at--1005--6691Chr02:1792275..1792299 (25 bp)
GTTCCTGAAATGATGTGTACTCGTT
LOC_Os02g04110
Os.54956.1.S1_at--844--5791Chr02:1792327..1792351 (25 bp)
GACGCTGAAAGCTGAACTCTTAGAT
LOC_Os02g04110
Target Sequence 
AAGGTTCACTCGGTTCTTTCAGAGAAGCAGCCTACCTGCCCCCAGTTTTATCTGTACAGCTCAGCAGATCGAGTAATACC
TGCTGAATGCGTCGAGCGCTTCATCGACATGCAGAAATCCCTAGGGCAGAGCGTATTCGCCCACAATTTTGTGTCATCGC
CACATGTGGACCACTACAGGAGCTTCCCTCATGTCTACGCAGCAAAGATCGACGAGTTCCTGAAGATTTGCTCCATAGCT
AGAGTATGACCAGTTTTTGACCAACAGGTATTCTTTCGAGACATAGGTATTGCTCTATTACCTTGAGAGGTATATGAATC
ATGGAATATTTACCCATTAGAGTTCCTGAAATGATGTGTACTCGTTCATGAAAAATATGAAATCTTGAAAAGTGACGCTG
AAAGCTGAACTCTTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis