Browse Element(s) Details


OsAffx.25637.1.S1_at

Description tigr:9631.m04792
TID=OsAffx.25637.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4916011/11hypothetical protein
LOC_Os02g041301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49120Os.14919.1.S1_at6/113+27925177..27931137transposon protein, putative, Mutator sub-class
LOC_Os03g49120Os.56216.1.S1_at2/113+27925177..27931137transposon protein, putative, Mutator sub-class
LOC_Os03g49126OsAffx.3690.1.S1_at11/113+27933023..27935849expressed protein
LOC_Os03g49132OsAffx.25636.1.S1_at11/113+27936611..27938041hypothetical protein
LOC_Os03g49140Os.50842.1.S1_at11/113+27938468..27939630ABC1 protein precursor, putative, expressed
LOC_Os03g49150Os.7558.1.S1_s_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49150Os.46756.1.S1_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49160OsAffx.25637.1.S1_at11/113+27952610..27953506hypothetical protein
LOC_Os03g49170Os.11140.1.S1_at11/113+27957871..27961377Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25637.1.S1_at--128--9211Chr03:27953435..27953459 (25 bp)
TGCCACCAACGATCGAGCATCTTGT
LOC_Os03g49160
OsAffx.25637.1.S1_at--353--5911Chr03:27953424..27953445 (22 bp)
GAGCATCTTGTGTCGGACTCGTTGA
LOC_Os03g49160
OsAffx.25637.1.S1_at--1089--5711Chr03:27953330..27953430 (25 bp)
GACTCGTTGAGTTGCTCTCTGAAAA
LOC_Os03g49160
OsAffx.25637.1.S1_at--609--10691Chr03:27953294..27953318 (25 bp)
TTGCCAGGTACCCTGTGGGCACTGA
LOC_Os03g49160
OsAffx.25637.1.S1_at--986--5351Chr03:27953059..27953081 (23 bp)
GAAGATGAGGTCACGCCCGCGTCCG
LOC_Os03g49160
OsAffx.25637.1.S1_at--782--10151Chr03:27952971..27952995 (25 bp)
TATCAGCGGCCAAGTTGGTGCCGGC
LOC_Os03g49160
OsAffx.25637.1.S1_at--226--10852Chr03:27952957..27952981 (25 bp)
TTGGTGCCGGCCGACGACATCTTCG
LOC_Os03g49160
OsAffx.25637.1.S1_at--864--5831Chr03:27952882..27952906 (25 bp)
GACCTCTCACCTGGCGATGTGGCAG
LOC_Os03g49160
OsAffx.25637.1.S1_at--22--8391Chr03:27952870..27952894 (25 bp)
GGCGATGTGGCAGAGCCTGCCTCCA
LOC_Os03g49160
OsAffx.25637.1.S1_at--397--5671Chr03:27952777..27952801 (25 bp)
GACATCGCAGCGAGATCAACGAGGG
LOC_Os03g49160
OsAffx.25637.1.S1_at--1053--6691Chr03:27952720..27952744 (25 bp)
GTTCCTGCTGCATCTACAGTGGTGG
LOC_Os03g49160
Target Sequence 
TGCCACCAACGATCGAGCATCTTGTGTCGGACTCGTTGAGTTGCTCTCTGAAAACCCTGCTGCGCTTGCCAGGTACCCTG
TGGGCACTGAGTACGATTGGGAAGATGAGGTCACGCCCGCGTCCGACGTCGGTGACGCGGAGGGTGCCGGGTCCGACTTC
GACCTCGACTTCGCGTTCGCGCCGCCGGTATCAGCGGCCAAGTTGGTGCCGGCCGACGACATCTTCGCGCACGGCCGCAT
CGTGCCTGCGTACCCGGTGTTCGACCGCAACTTCCTCGACCTCTCACCTGGCGATGTGGCAGAGCCTGCCTCCACGGCAG
CGCCCTCCACCGACACCTACTGCGCGTGGACGCCGCGCTCGGCGCCGAGCTCGCCCAGCCTCGACATCGCAGCGAGATCA
ACGAGGGGGAATTGCAACTCCGAGACGACGGCGAAGGGTGTTCCTGCTGCATCTACAGTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis