Browse Element(s) Details


OsAffx.3690.1.S1_at

Description tigr:9631.m06402
TID=OsAffx.3690.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4912611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49080NANA3+27909425..27909919hypothetical protein
LOC_Os03g49090Os.24942.4.A1_x_at3/113+27913837..27916586hypothetical protein
LOC_Os03g49090Os.24942.4.A1_at3/113+27913837..27916586hypothetical protein
LOC_Os03g49100NANA3+27918211..27920730retrotransposon protein, putative, unclassified
LOC_Os03g49110OsAffx.21249.1.S1_at1/113+27921890..27923629hypothetical protein
LOC_Os03g49120Os.14919.1.S1_at6/113+27925177..27931137transposon protein, putative, Mutator sub-class
LOC_Os03g49120Os.56216.1.S1_at2/113+27925177..27931137transposon protein, putative, Mutator sub-class
LOC_Os03g49126OsAffx.3690.1.S1_at11/113+27933023..27935849expressed protein
LOC_Os03g49132OsAffx.25636.1.S1_at11/113+27936611..27938041hypothetical protein
LOC_Os03g49140Os.50842.1.S1_at11/113+27938468..27939630ABC1 protein precursor, putative, expressed
LOC_Os03g49150Os.7558.1.S1_s_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49150Os.46756.1.S1_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49160OsAffx.25637.1.S1_at11/113+27952610..27953506hypothetical protein
LOC_Os03g49170Os.11140.1.S1_at11/113+27957871..27961377Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3690.1.S1_at--236--6851Chr03:27934611..27934635 (25 bp)
GTTTGGCCGACATTATGGACCTGGA
LOC_Os03g49126
OsAffx.3690.1.S1_at--1103--8091Chr03:27934627..27934651 (25 bp)
GGACCTGGATATAGCCGGCATCGAT
LOC_Os03g49126
OsAffx.3690.1.S1_at--1005--3291Chr03:27934653..27934677 (25 bp)
CAAATCTCAGTATTCTCACGTCAAC
LOC_Os03g49126
OsAffx.3690.1.S1_at--1010--8371Chr03:27934683..27934707 (25 bp)
GGCGAGCCCAAGAGATTTGCATTCT
LOC_Os03g49126
OsAffx.3690.1.S1_at--287--211Chr03:27934697..27934721 (25 bp)
ATTTGCATTCTTCTCAGACAGTCCC
LOC_Os03g49126
OsAffx.3690.1.S1_at--672--7391Chr03:27934759..27934783 (25 bp)
GTGATCGATGAACTGACCTGCTGTC
LOC_Os03g49126
OsAffx.3690.1.S1_at--1051--551Chr03:27935586..27935605 (20 bp)
ATCCTGGTCGTTGTTATCATTGTGA
LOC_Os03g49126
OsAffx.3690.1.S1_at--215--7591Chr03:27935614..27935638 (25 bp)
GGGCTAAGATTGTCCATCCAGATCT
LOC_Os03g49126
OsAffx.3690.1.S1_at--527--871Chr03:27935650..27935674 (25 bp)
ATGGCCGCACTGACTTTCTGGAAAT
LOC_Os03g49126
OsAffx.3690.1.S1_at--710--5351Chr03:27935706..27935730 (25 bp)
GAAGATGTTATCTCTCGTTGCGAGT
LOC_Os03g49126
OsAffx.3690.1.S1_at--285--6171Chr03:27935760..27935784 (25 bp)
GAGGATTGCGTCTGTTTTGATGCCA
LOC_Os03g49126
Target Sequence 
GTTTGGCCGACATTATGGACCTGGATATAGCCGGCATCGATCCAAATCTCAGTATTCTCACGTCAACTTTTTGGCGAGCC
CAAGAGATTTGCATTCTTCTCAGACAGTCCCCATACTTTTTTTTGCTGAGTGCTGCAACAAGGAAGGCGTGATCGATGAA
CTGACCTGCTGTCCAGTCATGGGGCATCCTGGTCGTTGTTATCATTGTGAGTGTGAAGGGGCTAAGATTGTCCATCCAGA
TCTAGAGAAGTACAATGGCCGCACTGACTTTCTGGAAATGGCTCGCGATAAATCAAGTGGCACGACAACTGAAGATGTTA
TCTCTCGTTGCGAGTATCTTCATGATGCTGTGGATATATGTGAGGAGGATTGCGTCTGTTTTGATGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis