Browse Element(s) Details


OsAffx.21249.1.S1_at

Description gb:NM_193332.1
DB_XREF= gi:34913747
GEN=OSJNBa0051H17.22
TID=OsAffx.21249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0051H17.22 (OSJNBa0051H17.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g364509/11transposon protein, putative, unclassified
LOC_Os03g491101/11hypothetical protein
LOC_Os05g497101/11retrotransposon protein, putative, unclassified
LOC_Os04g076701/11retrotransposon protein, putative, unclassified
LOC_Os08g111501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g077501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36410OsAffx.31083.4.S1_x_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.4.S1_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.5.S1_s_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.1.S1_x_at1/111+20539742..20540920hypothetical protein
LOC_Os01g36420NANA1+20541332..20544660transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36430NANA1+20547314..20553687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36440NANA1+20555149..20557212retrotransposon protein, putative, unclassified
LOC_Os01g36450OsAffx.21249.1.S1_at9/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36450Os.25438.1.A1_at2/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36460Os.10115.1.S1_at11/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36460Os.57514.1.S1_x_at1/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36470OsAffx.11348.2.S1_x_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.2.S1_s_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_x_at7/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_at4/111+20572238..20572864expressed protein
LOC_Os01g36480OsAffx.11349.1.S1_at11/111+20576093..20576875hypothetical protein
LOC_Os01g36490OsAffx.23529.1.S1_at11/111+20578181..20578490hypothetical protein
LOC_Os01g36500OsAffx.719.1.S1_x_at11/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.3.S1_at10/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.1.S1_s_at8/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.4.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.9446.1.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.8277.2.S1_at1/111+20582150..20587565Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21249.1.S1_at--344--7451Chr01:20562026..20562050 (25 bp)
GTGTGCAACCACAGGTTCGCCCGGT
LOC_Os01g36450
OsAffx.21249.1.S1_at--877--10511Chr01:20562069..20562344 (25 bp)
TTCACCACCAGGCAACGACACCAGG
LOC_Os01g36450
OsAffx.21249.1.S1_at--62--1731Chr01:20562339..20562363 (25 bp)
ACCAGGCTTCGGAACGGCTCAAGCG
LOC_Os01g36450
OsAffx.21249.1.S1_at--135--4911Chr01:20562344..20562368 (25 bp)
GCTTCGGAACGGCTCAAGCGCCGAA
LOC_Os01g36450
OsAffx.21249.1.S1_at--686--851Chr01:20562412..20562436 (25 bp)
ATGGCGGCACACCAAACATCACCGT
LOC_Os01g36450
OsAffx.21249.1.S1_at--161--2511Chr01:20562426..20562450 (25 bp)
AACATCACCGTTCAGTGCCGGGCAG
LOC_Os01g36450
OsAffx.21249.1.S1_at--294--4213Chr05:28421660..28421855 (25 bp)
CCGCAGCAAGGTGCCATGACCAAGG
LOC_Os05g49710
OsAffx.21249.1.S1_at--769--3411Chr01:20562514..20562538 (25 bp)
CAGCAAGGTGCCATGACCAAGGTGG
LOC_Os01g36450
OsAffx.21249.1.S1_at--973--7334Chr04:4070307..4070330 (24 bp)
TGGACCCAAAAGAGTTTCTATCCAT
LOC_Os04g07670
OsAffx.21249.1.S1_at--698--6131Chr01:20562910..20562934 (25 bp)
GAGGGATGTATGTACGTAGTTACCG
NONE
OsAffx.21249.1.S1_at--609--10111Chr01:20562918..20562942 (25 bp)
TATGTACGTAGTTACCGTGAGGAGT
NONE
Target Sequence 
GTGTGCAACCACAGGTTCGCCCGGTCGCTGCCCAAGTACACCCTTCACCACCAGGCAACGACACCAGGCTTCGGAACGGC
TCAAGCGCCGAACCAGGTCGCCATGACATGGACCCAACCTTCGTTCGACCCATCCATGGCGGCACACCAAACATCACCGT
TCAGTGCCGGGCAGCCGAACACAGTGACCCAACCACACGCGCAAGCCATGACTTTGCCCTTCGCCACACCATATCCGCAG
CAAGGTGCCATGACCAAGGTGGGGGACGAAAAGGGGCTACCGCTGAGTAGGGGAATCAAGATTCGCCCAATCCCACCCCA
GTTCAAGTTCCCACCTGTCCCGTGGTACTCGGGCGAAATGGACCCAAAAGAGTTTCTATCCATCTACGAGTCCGCGATCG
AAGCCACTCATGGTGACGAAAACACCAAGGCAAAGAGGCCAGGGGAGTCGATAAAGAAGGAAGAAAAGAGGGAGGGATGT
ATGTACGTAGTTACCGTGAGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis