Browse Element(s) Details


Os.25438.1.A1_at

Description gb:CR284510
DB_XREF= gi:44671076
DB_XREF=CR284510
CLONE=y729g09p3
TID=Os.25438.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25438 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g364502/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36410OsAffx.31083.4.S1_x_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.4.S1_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.5.S1_s_at11/111+20539742..20540920hypothetical protein
LOC_Os01g36410OsAffx.31083.1.S1_x_at1/111+20539742..20540920hypothetical protein
LOC_Os01g36420NANA1+20541332..20544660transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g36430NANA1+20547314..20553687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36440NANA1+20555149..20557212retrotransposon protein, putative, unclassified
LOC_Os01g36450OsAffx.21249.1.S1_at9/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36450Os.25438.1.A1_at2/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36460Os.10115.1.S1_at11/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36460Os.57514.1.S1_x_at1/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36470OsAffx.11348.2.S1_x_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.2.S1_s_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_x_at7/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_at4/111+20572238..20572864expressed protein
LOC_Os01g36480OsAffx.11349.1.S1_at11/111+20576093..20576875hypothetical protein
LOC_Os01g36490OsAffx.23529.1.S1_at11/111+20578181..20578490hypothetical protein
LOC_Os01g36500OsAffx.719.1.S1_x_at11/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.3.S1_at10/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.1.S1_s_at8/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.4.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.9446.1.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.8277.2.S1_at1/111+20582150..20587565Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25438.1.A1_at--1099--4831Chr01:20562766..20562790 (25 bp)
GCTAATAGCATTTATTCGTGGGAAC
LOC_Os01g36450
Os.25438.1.A1_at--404--10411Chr01:20562777..20562801 (25 bp)
TTATTCGTGGGAACAACTGCGCGAT
LOC_Os01g36450
Os.25438.1.A1_at--346--7451NONE
GTGGGAACAACTGCGCGATGTTTTT
NONE
Os.25438.1.A1_at--847--6211NONE
GAGGCGCTTATGAGGAGCCAAAGAT
NONE
Os.25438.1.A1_at--651--10411NONE
TTATGAGGAGCCAAAGATGCAGCAA
NONE
Os.25438.1.A1_at--183--2111NONE
ACATGCGTCGCTTCTGAATAGCCCG
NONE
Os.25438.1.A1_at--694--8971NONE
TGAATAGCCCGACCATTCTTGGAAC
NONE
Os.25438.1.A1_at--651--10551Chr08:6544128..6544148 (21 bp)
TTCTTGGAACGCTACTTCCCTTAAG
NONE
Os.25438.1.A1_at--97--331NONE
ATACTATTGTATTGGCCTTTCGGCA
NONE
Os.25438.1.A1_at--78--4451Chr04:11054881..11054905 (25 bp)
GCCTTTCGGCATCTCTTATTATGTA
NONE
Os.25438.1.A1_at--104--8291Chr04:11054888..11054912 (25 bp)
GGCATCTCTTATTATGTAAGCCCTT
NONE
Target Sequence 
GCTAATAGCATTTATTCGTGGGAACAACTGCGCGATGTTTTTGTCCTTAACTTTCGAGGCGCTTATGAGGAGCCAAAGAT
GCAGCAACACCTACTCGGCATTCGCCAGAGGCTAGGGGAGTCGATAAGGGAGTACATGCGTCGCTTCTGAATAGCCCGAC
CATTCTTGGAACGCTACTTCCCTTAAGCGTTTCTATGTCTAGAACGGGTGGCACCCAAATCGCCAACTTGTANAAATGTA
CATACTATTGTATTGGCCTTTCGGCATCTCTTATTATGTAAGCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25438.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis