Browse Element(s) Details


Os.9053.1.S1_at

Description gb:AK073303.1
DB_XREF= gi:32983326
TID=Os.9053.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024P22, full insert sequence.
FL= gb:AK073303.1 gb:AK103953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4918011/11Alkaline phytoceramidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49140Os.50842.1.S1_at11/113+27938468..27939630ABC1 protein precursor, putative, expressed
LOC_Os03g49150Os.7558.1.S1_s_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49150Os.46756.1.S1_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49160OsAffx.25637.1.S1_at11/113+27952610..27953506hypothetical protein
LOC_Os03g49170Os.11140.1.S1_at11/113+27957871..27961377Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9053.1.S1_at--451--2011Chr03:27964735..27964759 (25 bp)
ACTCTTTGCTGGCTATTTGATCGAA
LOC_Os03g49180
Os.9053.1.S1_at--156--1451Chr03:27964701..27964725 (25 bp)
AGAAGCTTTCACATTGGTACGTCAA
LOC_Os03g49180
Os.9053.1.S1_at--614--8251Chr03:27964668..27964692 (25 bp)
GGCACGCATGGTGGCATATTCTCAT
LOC_Os03g49180
Os.9053.1.S1_at--145--3591Chr03:27964617..27964641 (25 bp)
CATTCTTAATGTTTTGCCGAGCTCA
LOC_Os03g49180
Os.9053.1.S1_at--372--6071Chr03:27964509..27964533 (25 bp)
GAGTTCTCTATTTGTCAGTGCTGTT
LOC_Os03g49180
Os.9053.1.S1_at--67--1131Chr03:27964493..27964517 (25 bp)
AGTGCTGTTCTCCAGGACCTTAAAG
LOC_Os03g49180
Os.9053.1.S1_at--1122--2591Chr03:27964466..27964490 (25 bp)
AACGCCCTCATGTGCTTAGACAAGA
LOC_Os03g49180
Os.9053.1.S1_at--517--6351Chr03:27964384..27964408 (25 bp)
GATGCCTCACTAGATTTTGTTAACT
LOC_Os03g49180
Os.9053.1.S1_at--827--1811Chr03:27964351..27964375 (25 bp)
ACGCCTGTTTTGTACCATACTTAAT
LOC_Os03g49180
Os.9053.1.S1_at--1045--6111Chr03:27964306..27964330 (25 bp)
GAGTGTTGTCTCATAGTTTTGGTCA
LOC_Os03g49180
Os.9053.1.S1_at--971--6771Chr03:27964183..27964207 (25 bp)
GTTACTGCTTCATATGGCCATAGAT
LOC_Os03g49180
Target Sequence 
ACTCTTTGCTGGCTATTTGATCGAATGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTG
GCATATTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGAGCTCAACAGCGTGGGTGGGAGC
CCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTG
TCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCTCATGTGCTTAGACAAGAAGCAGAGGCATNTTTTTTGTATATGG
GCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTNACGCCTGTTTTGTACC
ATACTTAATTGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGAT
TTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGC
TTCATATGGCCATAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis