Browse Element(s) Details


Os.12251.1.S1_at

Description gb:U43931.1
DB_XREF= gi:1171353
TID=Os.12251.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12251 (NCBI UniGene Cluster)
DEF=Oryza sativa 18 kDa oleosin mRNA, complete cds.
PROD=18 kDa oleosin
FL= gb:U43931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4919011/11Oleosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49150Os.7558.1.S1_s_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49150Os.46756.1.S1_at11/113+27947070..27950553Yippee, putative, expressed
LOC_Os03g49160OsAffx.25637.1.S1_at11/113+27952610..27953506hypothetical protein
LOC_Os03g49170Os.11140.1.S1_at11/113+27957871..27961377Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0012511cellular_componentlipid storage body (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12251.1.S1_at--166--1711Chr03:27971417..27971441 (25 bp)
ACCAAGACATCCTCGTAAGCACGCG
LOC_Os03g49190
Os.12251.1.S1_at--1112--6831Chr03:27971341..27971365 (25 bp)
GTTTCGCTTCGCTTCGTAGTAGTCT
LOC_Os03g49190
Os.12251.1.S1_at--461--1791Chr03:27971304..27971328 (25 bp)
ACCGAGTCAAGAGTGTGTCCCGAAC
LOC_Os03g49190
Os.12251.1.S1_at--1111--6111Chr03:27971294..27971318 (25 bp)
GAGTGTGTCCCGAACGTGACCGTGC
LOC_Os03g49190
Os.12251.1.S1_at--949--7371Chr03:27971279..27971303 (25 bp)
GTGACCGTGCCTACGTGTCGTGTGA
LOC_Os03g49190
Os.12251.1.S1_at--746--7451Chr03:27971265..27971289 (25 bp)
GTGTCGTGTGATCCTAAAGTCTAAT
LOC_Os03g49190
Os.12251.1.S1_at--721--1151Chr03:27971248..27971272 (25 bp)
AGTCTAATGTTGTACCAGCTGCTGC
LOC_Os03g49190
Os.12251.1.S1_at--951--6971Chr03:27971237..27971261 (25 bp)
GTACCAGCTGCTGCGTACTACTGCT
LOC_Os03g49190
Os.12251.1.S1_at--130--6991Chr03:27971223..27971247 (25 bp)
GTACTACTGCTACTAGGTAAGATCG
LOC_Os03g49190
Os.12251.1.S1_at--453--271Chr03:27971101..27971125 (25 bp)
ATATGTATGCATTCCGTGTTCCTCT
LOC_Os03g49190
Os.12251.1.S1_at--812--3991Chr03:27971087..27971111 (25 bp)
CGTGTTCCTCTGTAAGAAAAGAATT
LOC_Os03g49190
Target Sequence 
ACCAAGACATCCTCGTAAGCACGCGCCNGCGCGCGCGAGTGGCTCGCGTCGCGTACGGGCTGGGTTTAGCCNTGCTGGGT
TTCGCTTCGCTTCGTAGTAGTCTCGCCCCCGACCGACCGAGTCAAGAGTGTGTCCCGAACGTGACCGTGCCTACGTGTCG
TGTGATCCTAAAGTCTAATGTTGTACCAGCTGCTGCGTACTACTGCTACTAGGTAAGATCGATGTAGTTTTCGATTTAGA
GTTGTGAATGATAATAAGCGAGGTCGGGGGGAGCNAAGCGATCTGGGGAGTTTGTGCTTGATTTGAGTTGATGATGATGA
ACATATGTATGCATTCCGTGTTCCTCTGTAAGAAAAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis