Browse Element(s) Details


Os.27054.1.S1_at

Description gb:AK120407.1
DB_XREF= gi:37990030
TID=Os.27054.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091H09, full insert sequence.
FL= gb:AK120407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4922011/11Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49170Os.11140.1.S1_at11/113+27957871..27961377Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g49180Os.9053.1.S1_at11/113+27964162..27968028Alkaline phytoceramidase family protein, expressed
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed
LOC_Os03g49260Os.18598.1.S1_at11/113+27998774..28002905Lipoxygenase 1, putative, expressed
LOC_Os03g49270Os.23084.1.S1_at11/113+28003740..28004353expressed protein
LOC_Os03g49280OsAffx.25639.1.S1_at11/113+28007599..28007869hypothetical protein
LOC_Os03g49290NANA3+28010599..28011371hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009152biological_processpurine ribonucleotide biosynthesis
GO:0004019molecular_functionadenylosuccinate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27054.1.S1_at--170--8351Chr03:27987413..27987437 (25 bp)
GGCTGGCTTGATATAGTTGCACTCA
LOC_Os03g49220
Os.27054.1.S1_at--925--6991Chr03:27987439..27987463 (25 bp)
GTACTGCTGCCAAATAAACGGTTTC
LOC_Os03g49220
Os.27054.1.S1_at--384--2371Chr03:27987454..27987478 (25 bp)
AAACGGTTTCTCATCTTTAAATCTG
LOC_Os03g49220
Os.27054.1.S1_at--823--3051Chr03:27987473..27987497 (25 bp)
AATCTGACCAAACTCGACGTGTTAA
LOC_Os03g49220
Os.27054.1.S1_at--740--4071Chr03:27987487..27987511 (25 bp)
CGACGTGTTAACTGGCCTCAAGGAA
LOC_Os03g49220
Os.27054.1.S1_at--254--4731Chr03:27987517..27987541 (25 bp)
GCTGGGAATTGCATATTGTACTGAA
LOC_Os03g49220
Os.27054.1.S1_at--634--8111Chr03:27987767..27987791 (25 bp)
GGACGACATTTCCTCTGTACGAAAC
LOC_Os03g49220
Os.27054.1.S1_at--378--8571Chr03:27987844..27987868 (25 bp)
TGGTTGGTATCCCAGTCCATTACAT
LOC_Os03g49220
Os.27054.1.S1_at--1089--8211Chr03:27987952..27987976 (25 bp)
GGCAATACCAATTTTGTTATTCCCT
LOC_Os03g49220
Os.27054.1.S1_at--504--2751Chr03:27987984..27988008 (25 bp)
AAGACACTGGTTGATTGGACTGTAT
LOC_Os03g49220
Os.27054.1.S1_at--25--7951Chr03:27988088..27988112 (25 bp)
GGATATTCTTTTTCTAGCTATTGTC
LOC_Os03g49220
Target Sequence 
GGCTGGCTTGATATAGTTGCACTCAAGTACTGCTGCCAAATAAACGGTTTCTCATCTTTAAATCTGACCAAACTCGACGT
GTTAACTGGCCTCAAGGAAGTAAAGCTGGGAATTGCATATTGTACTGAAGATGGTAAAGAAATTGAATCATTCCCTGCAG
NCCTTGATNTTNTGGAGAAAATTAAGGTCAAATATGAGGTTCTACCTGGGTGGGAGGACGACATTTCCTCTGTACGAAAC
TACAGCGNTCTCCCAGAGACTGNTCGTTTGTACGTGGAGAGGATAGAAGAGCTGGTTGGTATCCCAGTCCATTACATCGG
NGTAGGACCAGGGCGTGATGCTNTCATATACAAATAGGGGGACTTCAGGAAGCANGTATCCTATCAAATTNGTTGTTTAG
GGCAATACCAATTTTGTTATTCCCTAATAAGAAAGACACTGGTTGATTGGACTGTATAAAGGCCTGGAGGGTGTAGGAAT
TCCAAANATCTTTTTTTGCCCTAACAAGATTAAATACGGTCCCCNGCTGCTGTCCAATGGATATTCTTTTTCTAGCTATT
GTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis